Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,569,966 – 12,570,062 |
Length | 96 |
Max. P | 0.931851 |
Location | 12,569,966 – 12,570,062 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 68.18 |
Mean single sequence MFE | -38.05 |
Consensus MFE | -19.08 |
Energy contribution | -19.84 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.30 |
Mean z-score | -1.98 |
Structure conservation index | 0.50 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12569966 96 + 22224390 ----GUGUGUGUGGGUAAA--AGAGUGCGGGUGACGCAACAGCAACAACAAGUGCAAGUCGGCA-----GCAGAGUCGUUGGCAACUGAGUGCCGC-ACACA-ACACAC--------- ----(((((((((((((..--((..(((.(....).((((.(((........))).....(((.-----.....)))))))))).))...)))).)-)))).-))))..--------- ( -32.00) >DroVir_CAF1 39511 112 + 1 UUGUUCGUGUAUUGGUUAUGCGGCGCGCGGGUGACGCAACAGC------AAGUGCAAGGCGGCGGGCAGGCAGCGCCGUUGGCAACUGAAUACGAACGCACACUCAUGCACCACAGCA ..((((((((.(..(((..(((((((((..((..(((..(.((------....))...)..))).))..)).)))))))....)))..)))))))))(((......)))......... ( -41.20) >DroEre_CAF1 37342 101 + 1 CUGUGUGUGUGUGGGUACA--AGAGUGCGGCUGACGCAACAGCAACAACAAGUGCAAGGCG--------GCAGAGCCGUUGGCAACUGUGUGCCGC-ACAAA-AUACACACAG----- (((((((((((((((((((--..(((...((..((......(((........)))..(((.--------.....)))))..)).))).)))))).)-)))..-.)))))))))----- ( -43.60) >DroMoj_CAF1 38717 109 + 1 UUGUUCGUGUAUUGGUUAAGCGGCGCGCGGGUGACGCAACAGC------AAGUGUAAGGCGGCAGGCAGGCAGCGCCGUUGGCAACUGAAUACGAA-ACAUAUACAUACACAA--GCA .(((((((((.(..(((.(((((((((((.....)))......------...(((...((.....))..)))))))))))...)))..)))))).)-))).............--... ( -35.40) >consensus UUGUGCGUGUAUGGGUAAA__AGAGCGCGGGUGACGCAACAGC______AAGUGCAAGGCGGCA_____GCAGAGCCGUUGGCAACUGAAUACCAA_ACACA_ACACACACAA_____ ((((((((((((((............(((.....))).............(((((...(((((...........)))))..)).))).....)))).......))))))))))..... (-19.08 = -19.84 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:19 2006