Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,568,136 – 12,568,231 |
Length | 95 |
Max. P | 0.971526 |
Location | 12,568,136 – 12,568,231 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -22.89 |
Consensus MFE | -10.26 |
Energy contribution | -11.13 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.21 |
Mean z-score | -2.62 |
Structure conservation index | 0.45 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12568136 95 + 22224390 UUUAUUUAGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GGAGAA ............(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--...... ( -21.11) >DroVir_CAF1 38133 104 + 1 ----UGUUGUUGGUCAGCAACAUUUUUGUU---GUUGUAAUGUUUAAUGAAAGCAAUUAAACUGCACAGCCACAAAUAAAUAAAAACAAUAACAAUUAACAGCUGGCAAAA ----........((((((.......(((((---(((((...(((((((.......))))))).((...))...............))))))))))......)))))).... ( -22.12) >DroSec_CAF1 31837 95 + 1 UUUAUUAAGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GGAGAA ............(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--...... ( -21.11) >DroEre_CAF1 35537 95 + 1 UUUAUUUUGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GCAGAA ....((((((..(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--)))))) ( -22.01) >DroYak_CAF1 24266 95 + 1 UUUAUUUUGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCUGCAAAUAAAGAAAACAAA------------GC--GGAGAA ((..(((((((..((--(((....((((((.((((((((((((((...)))))))).......)))))).)))))))))))..))))))------------).--.))... ( -25.21) >DroMoj_CAF1 37436 107 + 1 ----UGUUGUUGGUCAGCAACAUUUUUGUUAUUGUUGUUGCGUUUAAUGAAAGCAAUUAAACUGCACAGCCACAAAUAAAUAAAAACAAUAACAAUUAACAGCUGGCAGGC ----....((..((((((.......(((((((((((..((((((((((.......))))))).)))..................)))))))))))......))))))..)) ( -25.77) >consensus UUUAUUUUGUUAGUU__UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA____________GC__GCAGAA ........................(((((..((((((((((((((...)))))))).......))))))..)))))................................... (-10.26 = -11.13 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:15 2006