Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,560,892 – 12,560,998 |
Length | 106 |
Max. P | 0.825412 |
Location | 12,560,892 – 12,560,998 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.41 |
Mean single sequence MFE | -14.93 |
Consensus MFE | -10.73 |
Energy contribution | -11.16 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.22 |
Structure conservation index | 0.72 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12560892 106 + 22224390 AAAUAUUCAAAAUGGAAGUUCAAAACUUCUGCCAAAGUUACA--CAAACUACAAAAUAGUUUUGGCCCAAAACAAAGAGCAAA--AAAUGAGGUUGUAA--------AGAAACUAAAA ......(((....((((((.....))))))((((((..((..--............))..)))))).................--...)))((((....--------...)))).... ( -13.04) >DroSec_CAF1 24335 108 + 1 AAAUAUUCAAAAUGGAAGUUCAAAACUUCUGCCAAAGUUACACACAAACUACAAAAUAGUUUUGGCCCA--ACAAAGAGCAAAAAAAAUGAGGUUGAAA--------AGAAACUAAAA .....(((((...((((((.....))))))((((((((.....))..((((.....))))))))))...--......................))))).--------........... ( -13.50) >DroEre_CAF1 25337 106 + 1 AAAUAUUCAAAAUGGAAGUUCAAAACUUCUGCAAAAGUUACA--CAAACUACAAAAUAGUUUUGGCUCA--ACAAAGAGCAAAA-AAACGAGGGUAAAAA-------AGAAACUAAAA ...(((((.....((((((.....)))))).....((((...--..))))........(((((.((((.--.....))))...)-))))..)))))....-------........... ( -17.20) >DroYak_CAF1 15888 114 + 1 AAAUAUUCAAAAUGGAAGUUCAAAACUUCUGCCAAAGUUAUA--CAAACUACAAAAUAGUUUUGGCUCA--ACAAAGCCCAAAAAAAAUGAGGAUAAAAAGCAACUGAAAAACUAAAA ...(((((.....((((((.....))))))((((((..(((.--...........)))..))))))...--....................)))))...................... ( -16.00) >consensus AAAUAUUCAAAAUGGAAGUUCAAAACUUCUGCCAAAGUUACA__CAAACUACAAAAUAGUUUUGGCCCA__ACAAAGAGCAAAA_AAAUGAGGUUAAAA________AGAAACUAAAA ...(((((.....((((((.....))))))((((((..((................))..)))))).........................)))))...................... (-10.73 = -11.16 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:14 2006