Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,556,141 – 12,556,251 |
Length | 110 |
Max. P | 0.881381 |
Location | 12,556,141 – 12,556,251 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -16.82 |
Energy contribution | -16.46 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12556141 110 + 22224390 UCAAACGCACAGUCAGCGC-UGCAAAUUGUUGUUUAAGCUUACUCAAAUUACGAGAUAUCAGCAAAAAUGCUGAAAUUGUGAUGAGAAAUAAAUGGAAAAAAGAAAUCUGA .........(((....(((-(..((((....)))).)))...((((..((((((....((((((....))))))..))))))))))................)....))). ( -21.00) >DroSec_CAF1 19885 110 + 1 UCAAACGUACAGUCAGCGC-UGCGAAUUGUUGUUUAAGUUUACUCAAAUUACGAGAUAUCAGCAAAAAUGCUGAAAUUGUGAUGAGAAAUAAAUGGGAAAAAGAAAUCUGA ..(((((.(((((..((..-.))..))))))))))..((((.((((..((((((....((((((....))))))..))))))))))))))..................... ( -22.60) >DroSim_CAF1 18189 110 + 1 UCAAACGCACAGUCAGCGC-UGCGAAUUGUUGUUUAAGUUUACUCAAAUUACGAGAUAUCAGCAAAAAUGCUGAAAUUGUGAUGAGAAAUAAAUGGGAAAAAGAAAUCUGA ..(((((.(((((..((..-.))..))))))))))..((((.((((..((((((....((((((....))))))..))))))))))))))..................... ( -22.60) >DroEre_CAF1 20987 108 + 1 UCAAACGCAAAGUCAGCGU-UGGAAAUUGUUAUUUAAGUCUACUCAAAUUACGAGAUAUCAGCAA-AAUGCUGAAAUUGUUAUGAGAAAUAAAUGGGAA-AGGAAAUCUGA ((.(((((.......))))-).))..((.(((((((..(((.(((.......)))...(((((..-...)))))..........)))..))))))).))-........... ( -21.20) >DroYak_CAF1 11701 109 + 1 UCAAACGCAACGUCAGCGCGUAGAAAUUGUUAUUUAAGUCUACUCAAAUUGCGAGAUAUCAGCAA-AAUGCUGAAAUUGUGAUGAGAAAUAAAUGGGAA-AGGAAAUCUGA .....(((((..((((((.(((((..(((.....))).))))).)...((((((....)).))))-...)))))..)))))..................-........... ( -22.00) >consensus UCAAACGCACAGUCAGCGC_UGCAAAUUGUUGUUUAAGUUUACUCAAAUUACGAGAUAUCAGCAAAAAUGCUGAAAUUGUGAUGAGAAAUAAAUGGGAAAAAGAAAUCUGA .....(((.......)))........((.(((((((......((((..((((((....((((((....))))))..))))))))))...))))))).))............ (-16.82 = -16.46 + -0.36)
Location | 12,556,141 – 12,556,251 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -18.86 |
Consensus MFE | -16.14 |
Energy contribution | -16.22 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.54 |
Structure conservation index | 0.86 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12556141 110 - 22224390 UCAGAUUUCUUUUUUCCAUUUAUUUCUCAUCACAAUUUCAGCAUUUUUGCUGAUAUCUCGUAAUUUGAGUAAGCUUAAACAACAAUUUGCA-GCGCUGACUGUGCGUUUGA ((((((...............................((((((....))))))......((..((((((....))))))..))........-((((.....)))))))))) ( -20.20) >DroSec_CAF1 19885 110 - 1 UCAGAUUUCUUUUUCCCAUUUAUUUCUCAUCACAAUUUCAGCAUUUUUGCUGAUAUCUCGUAAUUUGAGUAAACUUAAACAACAAUUCGCA-GCGCUGACUGUACGUUUGA ((((((...............................((((((....))))))......((..((((((....))))))..)).....(((-(......))))..)))))) ( -17.20) >DroSim_CAF1 18189 110 - 1 UCAGAUUUCUUUUUCCCAUUUAUUUCUCAUCACAAUUUCAGCAUUUUUGCUGAUAUCUCGUAAUUUGAGUAAACUUAAACAACAAUUCGCA-GCGCUGACUGUGCGUUUGA ((((((...............................((((((....))))))......((..((((((....))))))..))........-((((.....)))))))))) ( -19.90) >DroEre_CAF1 20987 108 - 1 UCAGAUUUCCU-UUCCCAUUUAUUUCUCAUAACAAUUUCAGCAUU-UUGCUGAUAUCUCGUAAUUUGAGUAGACUUAAAUAACAAUUUCCA-ACGCUGACUUUGCGUUUGA ...........-.........................(((((...-..)))))......((.(((((((....))))))).))....((.(-((((.......))))).)) ( -18.60) >DroYak_CAF1 11701 109 - 1 UCAGAUUUCCU-UUCCCAUUUAUUUCUCAUCACAAUUUCAGCAUU-UUGCUGAUAUCUCGCAAUUUGAGUAGACUUAAAUAACAAUUUCUACGCGCUGACGUUGCGUUUGA ...........-..............(((.(.((((.(((((...-.(((.((....)))))(((((((....)))))))..............))))).)))).)..))) ( -18.40) >consensus UCAGAUUUCUUUUUCCCAUUUAUUUCUCAUCACAAUUUCAGCAUUUUUGCUGAUAUCUCGUAAUUUGAGUAAACUUAAACAACAAUUUGCA_GCGCUGACUGUGCGUUUGA .....................................((((((....))))))......((..((((((....))))))..))......((.((((.......)))).)). (-16.14 = -16.22 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:13 2006