Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,555,997 – 12,556,088 |
Length | 91 |
Max. P | 0.994558 |
Location | 12,555,997 – 12,556,088 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -21.03 |
Consensus MFE | -10.12 |
Energy contribution | -9.96 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -1.90 |
Structure conservation index | 0.48 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12555997 91 + 22224390 -----------UUGCCUUCGAUAUUUAAGCCAGCUGUUUUUACAGCUGUUCUCCGACCAUUUAGUG--AUAGUCAGCUAAAUUUGCUU--UGGUAUUCUUUCGUUC -----------........(((((..(((((((((((....)))))))..........(((((((.--.......)))))))..))))--..)))))......... ( -20.70) >DroSec_CAF1 19747 89 + 1 -----------UUACCACCGAUAUUUAAGCCAGCUGUUUUUACAGCUGUUCU-CGACCUUUUAGUG--AUAGUCAGCAAAAUUUUCGU--UGGGGUUCUUU-GUUC -----------..(((.(((((........(((((((....)))))))....-.(((..((....)--)..)))............))--)))))).....-.... ( -20.50) >DroSim_CAF1 18051 89 + 1 -----------UUACCAGCGAUAUUUAAGCCAGCUGUUUUUACAGCUGUUCU-CGACCUUUUAGUG--AUAGUCAGCAAAAUUUUCGU--UGGGGUUCUUU-GUUC -----------...(((((((.......(((((((((....)))))))....-.(((..((....)--)..))).)).......))))--)))........-.... ( -24.44) >DroEre_CAF1 20842 97 + 1 UUUUUGGGAUUUUACCUCGGAUAUUUAAGCCAGCUGUUUUUACAGCUGUUCU-CGU-CAUCUAGUG--AUAGUCAGCAA--UUCGCUU--UGGGGUUCUUU-GUUC ......((((...((((((((.........(((((((....)))))))....-.((-...(((...--.)))...))..--.....))--)))))).....-)))) ( -21.80) >DroYak_CAF1 11558 81 + 1 --------------------GUAUUUUAGCCAGCUGUUUUUACAGCUGUUCU-CAA-CACUUAGUGAGAUAGUCAGCAG--UUUGUUUUCUGGGGUUCUUU-GUUC --------------------..........(((((((....)))))))....-.((-(.(((((.(((((((.......--.)))))))))))))))....-.... ( -17.70) >consensus ___________UUACCACCGAUAUUUAAGCCAGCUGUUUUUACAGCUGUUCU_CGACCAUUUAGUG__AUAGUCAGCAAAAUUUGCUU__UGGGGUUCUUU_GUUC ............................(((((((((....)))))))............(((......)))...))............................. (-10.12 = -9.96 + -0.16)
Location | 12,555,997 – 12,556,088 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.74 |
Mean single sequence MFE | -20.18 |
Consensus MFE | -12.74 |
Energy contribution | -13.42 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.13 |
Mean z-score | -2.74 |
Structure conservation index | 0.63 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12555997 91 - 22224390 GAACGAAAGAAUACCA--AAGCAAAUUUAGCUGACUAU--CACUAAAUGGUCGGAGAACAGCUGUAAAAACAGCUGGCUUAAAUAUCGAAGGCAA----------- ((.(....).......--((((....((..((((((((--......))))))))..))(((((((....))))))))))).....))........----------- ( -24.50) >DroSec_CAF1 19747 89 - 1 GAAC-AAAGAACCCCA--ACGAAAAUUUUGCUGACUAU--CACUAAAAGGUCG-AGAACAGCUGUAAAAACAGCUGGCUUAAAUAUCGGUGGUAA----------- ....-.....(((((.--.(((...(((((.((.....--)).)))))..)))-....(((((((....)))))))...........)).)))..----------- ( -22.40) >DroSim_CAF1 18051 89 - 1 GAAC-AAAGAACCCCA--ACGAAAAUUUUGCUGACUAU--CACUAAAAGGUCG-AGAACAGCUGUAAAAACAGCUGGCUUAAAUAUCGCUGGUAA----------- ....-........(((--.(((.(.((..(((((((..--........)))))-....(((((((....)))))))))..)).).))).)))...----------- ( -20.40) >DroEre_CAF1 20842 97 - 1 GAAC-AAAGAACCCCA--AAGCGAA--UUGCUGACUAU--CACUAGAUG-ACG-AGAACAGCUGUAAAAACAGCUGGCUUAAAUAUCCGAGGUAAAAUCCCAAAAA ....-.....(((.(.--.(((...--..)))......--.....((((-...-((..(((((((....)))))))..))...)))).).)))............. ( -17.30) >DroYak_CAF1 11558 81 - 1 GAAC-AAAGAACCCCAGAAAACAAA--CUGCUGACUAUCUCACUAAGUG-UUG-AGAACAGCUGUAAAAACAGCUGGCUAAAAUAC-------------------- ....-....................--..((......((((((.....)-.))-))).(((((((....)))))))))........-------------------- ( -16.30) >consensus GAAC_AAAGAACCCCA__AAGCAAAUUUUGCUGACUAU__CACUAAAUGGUCG_AGAACAGCUGUAAAAACAGCUGGCUUAAAUAUCGGAGGUAA___________ .............................((.((((((........))))))......(((((((....)))))))))............................ (-12.74 = -13.42 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:11 2006