Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,538,006 – 12,538,101 |
Length | 95 |
Max. P | 0.662785 |
Location | 12,538,006 – 12,538,101 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.83 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -28.82 |
Energy contribution | -30.32 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.78 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12538006 95 + 22224390 UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUC----------------UGACUCCUGCAGAUAUCCUUGCAGCCUCGCAGGACUCGCGCG--------CCACACUUUUGGUGUAAUUGCA ............((((((....))))))...----------------.((.((((((((.............)).)))))).))(((((--------(((......))))))....)). ( -29.82) >DroSec_CAF1 2124 116 + 1 UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC-UGCAGCCUCGCAGGACUCG--CGCUGCUGUCCCACACUUUUGGUGUAAUUGCA ............((((((....))))))....((..((((..((((.(((...((((((.....)-)))))..))).))))..))--.))..)).....((((.....))))....... ( -39.40) >DroSim_CAF1 2470 118 + 1 UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC-UGCAGCCUCGCAGGACUCGCGCGCUGCUGUCCCACACUUUUGGUGUAAUUGCA ............((((((....))))))....((..(((((.((((.(((...((((((.....)-)))))..))).))))...))).))..)).....((((.....))))....... ( -41.10) >consensus UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC_UGCAGCCUCGCAGGACUCGCGCGCUGCUGUCCCACACUUUUGGUGUAAUUGCA .((((((((((.((((((....))))))((.(((.(((.(((.....(((.((((((((.............)).)))))).))).....))).)))))).)))))))).))))..... (-28.82 = -30.32 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:00 2006