Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,536,893 – 12,536,992 |
Length | 99 |
Max. P | 0.780526 |
Location | 12,536,893 – 12,536,992 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -12.65 |
Energy contribution | -12.43 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.20 |
Mean z-score | -2.36 |
Structure conservation index | 0.51 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12536893 99 - 22224390 ACACACACAUACCUUUAUGCC-CCGCUUGUGAGGAGAGGGAG-----------UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA ...(((.((((....)))).(-((.(((.....))).))).)-----------))....((((((......)))))).((((..((((.......))))..))))...... ( -19.10) >DroPse_CAF1 45829 97 - 1 -----------GCCUCAUCUCUUUUCAUGUGUGGAGAGA---GAGAGAGAGAAAGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA -----------..(((.((((((((((....))))))))---)))))...((..(.((((((((((.....)))))).))))(((((.....)))))..)..))....... ( -24.90) >DroSec_CAF1 818 94 - 1 -----CACAUACCGUUAUCCC-CCGCUUGUGAGGAGGGGGAG-----------UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA -----.....(((((((((((-((.((.....)).)))))).-----------...((((((((((.....)))))).))))..............)))))))........ ( -30.30) >consensus _____CACAUACCCUUAUCCC_CCGCUUGUGAGGAGAGGGAG___________UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA .................((((.((........)).))))....................((((((......)))))).((((..((((.......))))..))))...... (-12.65 = -12.43 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:59 2006