Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,526,640 – 12,526,735 |
Length | 95 |
Max. P | 0.500000 |
Location | 12,526,640 – 12,526,735 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 81.98 |
Mean single sequence MFE | -36.44 |
Consensus MFE | -26.35 |
Energy contribution | -26.80 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.72 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12526640 95 - 22224390 AGCAGAAGGGUUCGUCUGGACGAGGUGGUGAUCAGGGUACACCACUGAUUAUCACACCAACCCGAAUGAGCAGCAAGUCGGGAUCGGGCGGUGCG .(((.......((((((((..(..(((((((((((((....)).)))))))))))..)..(((((.((.....))..))))).))))))))))). ( -37.71) >DroSec_CAF1 56253 93 - 1 --CAAAAGGGAUCAUCUGCACGAGGUGGAGAUCAGGGAACACCACUGAUCAUCACACCGACCCGAAUGAGCAGCAAGGCGGGAUCGGGCGGGGGC --............(((((.....(((..((((((((....)).))))))..))).((((((((..(........)..)))).)))))))))... ( -34.60) >DroEre_CAF1 56359 93 - 1 --CAGAAGGGUUCGAUGGCGCGCGGUGGCGACCAGGGAACGCCACUGAUUAUCACGCCGACCCGAAUGGGCAGCAAGGCGGGAGCGGGCGUGGCC --(((..((((((..((((((......))).)))..)))).)).)))....((((((((.(((....))))......((....)).))))))).. ( -37.00) >consensus __CAGAAGGGUUCGUCUGCACGAGGUGGAGAUCAGGGAACACCACUGAUUAUCACACCGACCCGAAUGAGCAGCAAGGCGGGAUCGGGCGGGGCC ...............((((.(((((((..((((((((....)).))))))....))))..((((..((.....))...)))).))).)))).... (-26.35 = -26.80 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:58 2006