Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,525,743 – 12,525,857 |
Length | 114 |
Max. P | 0.868175 |
Location | 12,525,743 – 12,525,857 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -51.15 |
Consensus MFE | -28.94 |
Energy contribution | -31.00 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.25 |
Mean z-score | -1.96 |
Structure conservation index | 0.57 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12525743 114 - 22224390 AUGGGCAUGGUGGG---AAUUGGUCAUCCGGGCCCGAUGGCCCACGCAAGUUCCGCCGGAGGAAUCGGUGUGGACAAGGCGACCAUAACGCCGGUUGUCAAGAG---CUCUAGUGGAUCA .(((((....((((---...(((....)))..))))...)))))(((..((((((((((.....)))))).))))..(((((((........))))))).....---.....)))..... ( -42.60) >DroSec_CAF1 55326 117 - 1 AUGGGCGUGGUGGGGCAACUUGGUCAUCCGGGCCUUAUGGCCCAUGCAAGUUCCGCCGGAGGAAUCGGUGUGGACAAGGCCACCAUAACGCCGGUUGUCAAGAG---CUCUAGCGGAUCA ((.(((((.(((((((..((((..((((((((((....)))))......(((((......))))).)).)))..))))))).)))).))))).)).(((....(---(....)).))).. ( -48.70) >DroEre_CAF1 55465 117 - 1 AUGGGCGUGGUGGGCCAGCUUGGGCAUCCGGGCCUAAUGGCGCAUGCCAGUGCCGCUGGAGGAGUCGGCGUGGACAAGGCCACCAUAACACCGGUGGUCAAGAG---CUCCAGCGGCGCC .(((((.(((...(((......)))..))).))))).((((....))))((((((((((((..(((......)))..(((((((........))))))).....---)))))))))))). ( -64.90) >DroAna_CAF1 65910 94 - 1 CUGGGCGUGG---G---UCUGGCCCAUCCCGGCCUGAUGGGCCACG------------------GCGGGGUGGACAAGGCCACCAUAACGCCGGUGGUGAAGAGCGGCUCCAGUGC--CA ..(((.((((---(---.....))))))))((((((..(((((.((------------------(((.(((((......)))))....)))))...((.....)))))))))).))--). ( -48.40) >consensus AUGGGCGUGGUGGG___ACUUGGUCAUCCGGGCCUGAUGGCCCACGCAAGUUCCGCCGGAGGAAUCGGUGUGGACAAGGCCACCAUAACGCCGGUGGUCAAGAG___CUCCAGCGGAUCA .(((((.(((...(((......)))..))).))))).(((.((((((..(((((......)))))..))))))....(((((((........)))))))..........)))........ (-28.94 = -31.00 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:55 2006