Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,406,273 – 1,406,377 |
Length | 104 |
Max. P | 0.512986 |
Location | 1,406,273 – 1,406,377 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -26.70 |
Energy contribution | -26.95 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.48 |
Structure conservation index | 0.73 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1406273 104 - 22224390 CCGGCUUAGCGGGGAUCCGGAUACGGAUCCGCUACGGAUGCGGAUGCCGAUGCGAAUGCGAAUGCGAAUGUUCGUUUGCAUGCCACAGCUGUC--CCGACUCAUCA .(((..(((((.(((((((....))))))).)...((.((((..(((....)))..)))).((((((((....)))))))).))...))))..--)))........ ( -40.00) >DroSec_CAF1 11706 98 - 1 CCGGCUUAGCGUGGAUCCGGAUACAGAUCCGCUACGGAUGCGGAUGCCGAUGCGA------AUGCGAAUGUUCGUUUGCAUGCCACAGCUGCC--CCUGCUCAUCA ..(((..(((((((...(((......((((((.......)))))).)))((((((------(((........))))))))).)))).))))))--........... ( -32.90) >DroEre_CAF1 8134 88 - 1 CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUGCGGAUGCGA------------------AUGCGGAUGUUCCUUUGCAUGCCACGGCUGCCCCCCGGCUCAUCA ((((....((..(((((((....)))))))((((.((((((((------------------(...((.....))))))))).)).)))).))...))))....... ( -37.60) >DroYak_CAF1 8048 86 - 1 CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUACGGAUGCGG------------------AUGCGAAUGUUCCUUUGCAUGCCACAACUGCC--CCGGCUCAUCA ((((......(((((((((....)))))))))..(((.((.((------------------(((((((......))))))).)).)).)))..--))))....... ( -35.40) >consensus CCGGCUUAGCGUGGAUCCGGAUACGGAUCCGCUACGGAUGCGG__________________AUGCGAAUGUUCCUUUGCAUGCCACAGCUGCC__CCGGCUCAUCA ..(((.((((..(((((((....)))))))))))...........................((((((((....)))))))))))......(((....)))...... (-26.70 = -26.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:40 2006