Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,518,582 – 12,518,678 |
Length | 96 |
Max. P | 0.813873 |
Location | 12,518,582 – 12,518,678 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.77 |
Mean single sequence MFE | -16.18 |
Consensus MFE | -13.65 |
Energy contribution | -13.40 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -1.74 |
Structure conservation index | 0.84 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12518582 96 - 22224390 CAAAA---ACGUCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUUAAAAAAAAAAAA .....---(((((.(.....).)))))..........(((((((((((.....)))))).........(((((....))))))))))............ ( -14.10) >DroSec_CAF1 48144 87 - 1 CAAAA---ACGUCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUAAAA--------- .....---(((((.(.....).)))))...........((((((((((.....)))))).........(((((....)))))))))....--------- ( -13.20) >DroEre_CAF1 48550 89 - 1 CAAAGAGCACGCCAGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCAAAU---CAC------- ...((.(((((((...........(((........))).((((....)))).))))))).)).....((((((....))))))...---...------- ( -22.50) >DroYak_CAF1 48344 89 - 1 CAAAA---ACGCCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUAAAAAUGAUUUAAGCAAAUCACAUAAACAA------- .....---(((((...........(((........))).((((....)))).)))))..........((((((....)))))).........------- ( -14.90) >consensus CAAAA___ACGCCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUAAAAAA_______ ........(((((...........(((........))).((((....)))).)))))..........((((((....))))))................ (-13.65 = -13.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:48 2006