Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,513,084 – 12,513,179 |
Length | 95 |
Max. P | 0.796464 |
Location | 12,513,084 – 12,513,179 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.37 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -33.26 |
Energy contribution | -32.98 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.18 |
Structure conservation index | 0.96 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12513084 95 + 22224390 AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAAC---- .(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......)))).......---- ( -33.90) >DroSec_CAF1 42255 95 + 1 AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUUAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAGC---- .(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......)))).......---- ( -32.10) >DroSim_CAF1 39745 95 + 1 AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAUCAGCAGUCCAAUUUGGGACUCUAAGC---- .....((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).))...((.(((((......)))))))..))---- ( -31.30) >DroEre_CAF1 43674 94 + 1 AUGCAGCAGGAGGAUACGCCCAGGCUGCCGGUAUUCAACCGUCUCAGCUCCGGCGUGGAGGCCUACCAGCAGCAGUCCAACUUGGGACUCUAAG----- .(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......))))......----- ( -38.40) >DroYak_CAF1 38128 99 + 1 AUGCAGCAGGAGGAUACGCCCAGGCUGCCGGUAUUCAAUCGUCUCAGCUCCGGAGUGGAGGCCUACCAGCAGCAGUCCAACUUGGGACUCUAAGGGCGA ................(((((..(((((.((((.......(((((.(((....))).))))).)))).)))))(((((......)))))....))))). ( -37.90) >consensus AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAGC____ .(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......))))........... (-33.26 = -32.98 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:47 2006