Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,508,495 – 12,508,585 |
Length | 90 |
Max. P | 0.885596 |
Location | 12,508,495 – 12,508,585 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -19.50 |
Energy contribution | -20.34 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.85 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12508495 90 + 22224390 CCCACAAAUCGAGUUUAUGCGAUUGGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU ........((((((((((((((.((((((((((.(((.....))).)))...)))))))....)))..))))))))))).--.......... ( -21.40) >DroSec_CAF1 37763 90 + 1 CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU ........(((((((((((((((((((.....))(((.....)))..))))))..((((.....))))))))))))))).--.......... ( -25.10) >DroSim_CAF1 35076 90 + 1 CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU ........(((((((((((((((((((.....))(((.....)))..))))))..((((.....))))))))))))))).--.......... ( -25.10) >DroEre_CAF1 38904 90 + 1 CCCACAAAUCGAGUUUAUGCGAUCCGCUCUUUGUGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCAAC--CCGACGUCGU ..........(((((((((...((((...((((((((.....)))))))).))))((((.....)))))))))))))...--.......... ( -23.30) >DroYak_CAF1 33371 92 + 1 ACCACAAAUCGAGUUUAUGCGAUCCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCAAACACCGACGUCGU ..........(((((((((...((((...((((.(((.....))).)))).))))((((.....)))))))))))))............... ( -19.40) >consensus CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC__CCGACGUCGU ........(((((((((((((((((((.....))(((.....)))..))))))..((((.....)))))))))))))))............. (-19.50 = -20.34 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006