Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,503,796 – 12,503,913 |
Length | 117 |
Max. P | 0.907602 |
Location | 12,503,796 – 12,503,913 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -14.38 |
Consensus MFE | -14.10 |
Energy contribution | -14.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.98 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12503796 117 + 22224390 UCUCCAUUCCCCUCUAGCCCCACUCUUCUUCUCUCUCCUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU ................(((.....................((.....))....((((...((.(((((....))))).)).))))))).......((((.....))))......... ( -15.10) >DroSec_CAF1 33161 114 + 1 ACUCCAUUCCCCUUUAGCCCCACUCU---UCUCUCUCUUCACUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU ..........................---.................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10) >DroSim_CAF1 30149 114 + 1 ACUCCAUUCCCCUUUAGCCCCACUCU---UCUCUCUCUUCACUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU ..........................---.................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10) >DroEre_CAF1 34532 106 + 1 CCAUCAUUCCCCUUUA--CCC---------CUCUCUCUUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU ................--...---------..........((...((((....((((...((.(((((....))))).)).)))).))))..)).((((.....))))......... ( -14.50) >DroYak_CAF1 28938 108 + 1 UCAUCAUUCCCCAUUAGCCCC---------CCCUCUCUUCGCCUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU .....................---------................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... ( -14.10) >consensus ACUCCAUUCCCCUUUAGCCCCACUCU___UCUCUCUCUUCGCUUUUUGCAUUUGUUUGACUGGUUUGCUUAAGCAAAACAAAAACGGCAAUUGCAACAUUUUAUAUGUAUUUCCCUU ..............................................((((.(((((....((.(((((....))))).)).....))))).))))((((.....))))......... (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:44 2006