Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,500,835 – 12,500,936 |
Length | 101 |
Max. P | 0.611912 |
Location | 12,500,835 – 12,500,936 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -25.49 |
Consensus MFE | -10.41 |
Energy contribution | -11.09 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.23 |
Mean z-score | -2.44 |
Structure conservation index | 0.41 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12500835 101 - 22224390 GUCUCCUUAAAUGGGAAGGGAUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUAGGUAGUAGUAGUAGAUCUCUACCUUU---UUUUUAUCAUCUCUUUCCGCA ............((((((((((((((((((..........)))).........((((((.((........))))))))..---....))))))))))))))... ( -30.60) >DroSec_CAF1 30316 89 - 1 GUCGCCUUAAAUGGGAAGGGAUGAUAUUGGGGUAAAGAUAGCAACAGAUCAGUACGUAUU---------UCUCUACCUUU---UUUU---CAUCUCUUUCCGCA ............((((((((((((.(..((((((.(((..((.((......))..))...---------))).)))))).---.).)---)))))))))))... ( -27.10) >DroSim_CAF1 27272 89 - 1 GUCGCCUUAAAUGGGAAGGGAUGAUAUUGGGGUAAAGAUAGCAACAGAUCAGUACGUAUU---------UCUCUACCUUU---UUUU---CAUCUCUUUCCGCA ............((((((((((((.(..((((((.(((..((.((......))..))...---------))).)))))).---.).)---)))))))))))... ( -27.10) >DroEre_CAF1 31565 92 - 1 GUCUCCUUAAAUAGGAGGCGAUGAUAAUGCGGUAAAUAUAGCAAAAGAUCAGUAUGUAUU---------UCUCUAACUCUACCUCUU---GAUCUUCUUCCGCA (((((((.....)))))))........(((((............((((((((...(((..---------..........)))...))---))))))...))))) ( -21.86) >DroYak_CAF1 25816 90 - 1 GACUG-UUAAAUAGGAAGGGCUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUAGGUAUU---------UCUCUACCUUU-CUUUUU---GGUCCCUUUUCGCA ((((.-..(((.(((((((((((((.((((..........))))...))))))(((....---------)))...)))))-)).)))---)))).......... ( -20.80) >consensus GUCUCCUUAAAUGGGAAGGGAUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUACGUAUU_________UCUCUACCUUU___UUUU___CAUCUCUUUCCGCA ...........((((((((((((..........((((.(((....(((.....................)))))).))))..........)))))))))))).. (-10.41 = -11.09 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:42 2006