Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,499,694 – 12,499,787 |
Length | 93 |
Max. P | 0.562614 |
Location | 12,499,694 – 12,499,787 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.84 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -12.33 |
Energy contribution | -12.14 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -1.92 |
Structure conservation index | 0.59 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12499694 93 - 22224390 GGGAAUAUCGUAUUCUGCGAAUAAUAAUAUGCC-GUGGAUAAU--AAAAUAU---------------UCCACACAUUCCCAGAAUCCGGGAAAAUGUUCAAACUUCAGAUC .(((((((..(((((..((.(((....)))..)-)..))..))--)..))))---------------)))(((..(((((.......)))))..))).............. ( -21.40) >DroSec_CAF1 29184 93 - 1 GGGAAUAUCGUAUUCUGCGAAUAAUAAUAUGCC-GUGGAUAAU--AUAAUAU---------------UCCACACAUUCCCAGAAUCCGGGAAAAGGUUUAAACUUCAGUUC .(((((((..(((((..((.(((....)))..)-)..))..))--)..))))---------------))).....(((((.......)))))................... ( -21.50) >DroEre_CAF1 30376 110 - 1 GGGAAUAUCGUGUUCUACGAAUAACAAUAAGCC-AUGGAUAAUGGAUAAUGUUAAUGUGGAAUGUUAUCCACACAUUCCCAGAAUCCGGGAAAAAAUUAAAACUUCAUAUC ((((((.(((((...))))).(((((.....((-((.....))))....))))).((((((......)))))).))))))............................... ( -24.80) >DroYak_CAF1 24677 94 - 1 GGGAAUAUCGUGUUCUACGAAUAACAAUAAGCCCGUGAAUAAU--AUAAUAU---------------UCCACACAUUUCCAGAAUCCGGGAAAAAAUUUAAACUUCAGAUC .(((((((..((((.((((..............))))...)))--)..))))---------------))).....(((((........))))).................. ( -15.24) >consensus GGGAAUAUCGUAUUCUACGAAUAACAAUAAGCC_GUGGAUAAU__AUAAUAU_______________UCCACACAUUCCCAGAAUCCGGGAAAAAAUUUAAACUUCAGAUC ((((((.(((((...)))))..............(((((............................)))))..))))))............................... (-12.33 = -12.14 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:40 2006