Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,497,678 – 12,497,768 |
Length | 90 |
Max. P | 0.998968 |
Location | 12,497,678 – 12,497,768 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -15.95 |
Consensus MFE | -13.89 |
Energy contribution | -13.95 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.81 |
Structure conservation index | 0.87 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12497678 90 + 22224390 GCA-AAGAGCGAGUGUAGCGACCACCACCGCUACCUACCUAAACAAAAAAGGCAACUCUUCAAUUUUCAAUCCUCACCCUUCUCCAUUAUA ...-..(((.((((((((((........))))))...(((.........)))..))))))).............................. ( -14.30) >DroSec_CAF1 27169 91 + 1 GCAAAAGAGCGAGUGUAGCGACCACCACCGCUACCUACCUAAACAAAAAAGGCAACUCUUCAAUCUUCAAUCCUCACCCUCCUCCAUUAUA ......(((.(((.((((((........))))))...............((....)).....................))))))....... ( -15.20) >DroEre_CAF1 28229 91 + 1 GUAAAAGAGCGAGUGUAGCGACCACCACCGCUACCUACCUAAACAAAAAAGGCAACUCUUCAAUCUUGAAUCCUCACUCUCCUCCUUUUUU .....((((.(((.((((((........))))))...............((....))...............))).))))........... ( -17.10) >DroYak_CAF1 22570 86 + 1 GUAAAAGAGCGAGUGUAGCGACCACCAUCGCUACCUACCUAAACAGAAAAGGCAAC-----AAUCUUCAAUCCUCACCCUCCUCCUUUUUU ..(((((((.(((.(((((((......)))))))................(....)-----....................)))))))))) ( -17.20) >consensus GCAAAAGAGCGAGUGUAGCGACCACCACCGCUACCUACCUAAACAAAAAAGGCAACUCUUCAAUCUUCAAUCCUCACCCUCCUCCAUUAUA ......(((.(((.((((((........))))))...............((....)).....................))))))....... (-13.89 = -13.95 + 0.06)
Location | 12,497,678 – 12,497,768 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -28.74 |
Energy contribution | -28.43 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -3.08 |
Structure conservation index | 0.99 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12497678 90 - 22224390 UAUAAUGGAGAAGGGUGAGGAUUGAAAAUUGAAGAGUUGCCUUUUUUGUUUAGGUAGGUAGCGGUGGUGGUCGCUACACUCGCUCUU-UGC .........((((((((((.................((((((.........))))))(((((((......))))))).)))))))))-).. ( -28.00) >DroSec_CAF1 27169 91 - 1 UAUAAUGGAGGAGGGUGAGGAUUGAAGAUUGAAGAGUUGCCUUUUUUGUUUAGGUAGGUAGCGGUGGUGGUCGCUACACUCGCUCUUUUGC ......(.(((((((((((..(((((.(..((((......))))..).)))))....(((((((......))))))).))))))))))).) ( -28.70) >DroEre_CAF1 28229 91 - 1 AAAAAAGGAGGAGAGUGAGGAUUCAAGAUUGAAGAGUUGCCUUUUUUGUUUAGGUAGGUAGCGGUGGUGGUCGCUACACUCGCUCUUUUAC ........(((((((((((..((((....))))...((((((.........))))))(((((((......))))))).))))))))))).. ( -29.50) >DroYak_CAF1 22570 86 - 1 AAAAAAGGAGGAGGGUGAGGAUUGAAGAUU-----GUUGCCUUUUCUGUUUAGGUAGGUAGCGAUGGUGGUCGCUACACUCGCUCUUUUAC ........(((((((((((...........-----.((((((.........))))))((((((((....)))))))).))))))))))).. ( -30.30) >consensus AAAAAAGGAGGAGGGUGAGGAUUGAAGAUUGAAGAGUUGCCUUUUUUGUUUAGGUAGGUAGCGGUGGUGGUCGCUACACUCGCUCUUUUAC ........(((((((((((.................((((((.........))))))(((((((......))))))).))))))))))).. (-28.74 = -28.43 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:37 2006