Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,496,134 – 12,496,231 |
Length | 97 |
Max. P | 0.512449 |
Location | 12,496,134 – 12,496,231 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -14.68 |
Consensus MFE | -10.12 |
Energy contribution | -10.62 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12496134 97 + 22224390 UUUUUUCGCAAAUUUGCGUAAACUAAAAUGCAAAGCCAAAGGGUCAAGUAGAGUCAUAGA---AAGGAA-AAAAUAACAUUGAGCAAGGAGAAAAACAACA-- (((((((.....(((((((........)))))))(((((.((.((.....)).)).....---..(...-.......).))).))...)))))))......-- ( -13.70) >DroSec_CAF1 25672 100 + 1 UUUUUUCGCAAAUUUGCGUAAACUAAAAUGCAAAGCCAAAGGGUCAAGUAGAGCCAUAGAAUAAAGGAA-AAAAUAACAGUGAGCAAGGAGAAAAACAACA-- (((((((.....(((((((........)))))))((((..((.((.....)).))..........(...-.......)..)).))...)))))))......-- ( -15.10) >DroEre_CAF1 26633 91 + 1 U-UUUUCGCAAAUUUGCGUAAACUAAAAUGCAAAUCCAAAGGGUCAAGUAGAGU--------AACGGAA-AAAAUAACAGUGUGCAAGGAGAAAAACAACA-- (-((((((((..(((((((........)))))))(((....(.((.....)).)--------...))).-............)))...)))))).......-- ( -12.70) >DroYak_CAF1 20998 95 + 1 UUUUUUCGCAAAUUUGCGUAAACUAAAAUGCAAAGCCAAAGGGUCAAGUAGAGU--------AAAGAAAAAAAAUAACAGUGAGCGGGGAGAAAAACAACAAU ((((..(((...(((((((........)))))))(((....)))..........--------.....................)))..))))........... ( -17.20) >consensus UUUUUUCGCAAAUUUGCGUAAACUAAAAUGCAAAGCCAAAGGGUCAAGUAGAGU________AAAGGAA_AAAAUAACAGUGAGCAAGGAGAAAAACAACA__ (((((((((...(((((((........)))))))(((....))).......................................))...)))))))........ (-10.12 = -10.62 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:36 2006