Locus 4805

Sequence ID X_DroMel_CAF1
Location 12,492,434 – 12,492,542
Length 108
Max. P 0.728111
window7860

overview

Window 0

Location 12,492,434 – 12,492,542
Length 108
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 88.84
Mean single sequence MFE -30.80
Consensus MFE -20.89
Energy contribution -21.45
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.68
SVM decision value 0.42
SVM RNA-class probability 0.728111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12492434 108 - 22224390
AUUGGUGUUUUCCAAUCAGCGCCUUCUGCUUGCAAACGGGGUGCUGAUUGGAAUGGGUCAGUAGUGCAGUGGACAUCCCAUAAAGUUAAUAAAUAAUAAA-AAGCACAU
(((((..(.((((((((((((((((.((....))...)))))))))))))))).)..))))).((((.((((.....))))...((((.....))))...-..)))).. ( -37.60)
>DroSec_CAF1 21991 95 - 1
AUUGGUGUUU--CAAUCAGCGCCUUCUGCUU-----------GCUGAUUGGAAUGGGUCAGUAGUGCAGUGGACAUCCCAUAAAGUUAAUAAAUAAUAAA-AAGCAGAU
...((((((.--.....)))))).(((((((-----------(((((((......)))))))......((((.....))))...................-))))))). ( -24.90)
>DroEre_CAF1 22779 107 - 1
AUUGGUGUUC--CAAUCAGCGCCUUCUGUUCGCAAACGGGGUGCUGAUUGGAAUGGGUCAGUGGUGCAGUGGACAUCCCAUAAAGUUCAUAAAUAAUAAAAAAGCAGAU
((((((((((--(((((((((((..(((((....)))))))))))))))))))))..)))))......((((((..........))))))................... ( -33.40)
>DroYak_CAF1 17487 106 - 1
AUUGGUGUUC--CAAUCAGCGCCUUCUGCUUGCAAACUGGUUGCUGAUUGGAAUGGGUCAGUGGUGCGGUGGACAUCCCAAAAAGUUAAUAAAUAAUAAA-AAGCAGAU
((((((((((--(((((((((((...((....))....)).))))))))))))))..)))))..(((..(((.....)))....((((.....))))...-..)))... ( -27.30)
>consensus
AUUGGUGUUC__CAAUCAGCGCCUUCUGCUUGCAAACGGGGUGCUGAUUGGAAUGGGUCAGUAGUGCAGUGGACAUCCCAUAAAGUUAAUAAAUAAUAAA_AAGCAGAU
...((((((........)))))).(((((((...........(((((((......)))))))......((((.....))))....................))))))). (-20.89 = -21.45 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:33 2006