Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,490,674 – 12,490,771 |
Length | 97 |
Max. P | 0.991372 |
Location | 12,490,674 – 12,490,771 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -17.04 |
Consensus MFE | -16.14 |
Energy contribution | -15.82 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.95 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12490674 97 + 22224390 --AUAUAAAAUGAUACCCCAGCAAAUGUGAUUCACGAGUGAAUCACUGCGAUCGAUAAUAACAUAAACCGAAAUUAUUGCAAAUCAAUACGAUUUAAAC --......((((((......(((...((((((((....)))))))))))..(((..............))).))))))..(((((.....))))).... ( -16.34) >DroSec_CAF1 20341 97 + 1 --AUAUAAAAUGAUACCCCAGCAAAUGUGAUUCACGAGUGAAUCACUGCGAUCGAUAGUAACACAAACCGAAAUUAUUGCAAAUCAAUACGAUUCAAGC --........((((......(((...((((((((....)))))))))))...(((((((.............)))))))...))))............. ( -16.22) >DroSim_CAF1 21886 97 + 1 --AUAUAAAAUGAUACCCCAGCAAAUGUGAUUCACGAGUGAAUCACUGCGAUUGAUAGUAACACAAACCGAAAUUAUUGCAAAUCAAUACGAUUCAAGC --........(((.......(((...((((((((....)))))))))))((((..((((((............))))))..))))........)))... ( -17.10) >DroEre_CAF1 21093 99 + 1 UGAUAUCAAAUGAUACCCCAGCAGAUGUGAUUCACGAGUGAAUCACUGCGAUCGAUAGUAACACAAACCGAAAUUAUUGCAAAUCAAUUCGAUUCAAAU (((.(((((.((((......(((...((((((((....)))))))))))...(((((((.............)))))))...)))).)).))))))... ( -18.52) >DroYak_CAF1 15776 99 + 1 CGAUAUAAAAUGAUACCCCAGCAAAUGUGAUUCACGAGUGAAUCACUGCGAUCGAUAGUAACACAAACCGAAAUUAUUGCAAAUCAAUUCGAUUCAAAC .(((....((((((......(((...((((((((....)))))))))))..(((..............))).))))))....))).............. ( -17.04) >consensus __AUAUAAAAUGAUACCCCAGCAAAUGUGAUUCACGAGUGAAUCACUGCGAUCGAUAGUAACACAAACCGAAAUUAUUGCAAAUCAAUACGAUUCAAAC ..........((((......(((...((((((((....)))))))))))...(((((((.............)))))))...))))............. (-16.14 = -15.82 + -0.32)
Location | 12,490,674 – 12,490,771 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -19.56 |
Energy contribution | -19.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.91 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12490674 97 - 22224390 GUUUAAAUCGUAUUGAUUUGCAAUAAUUUCGGUUUAUGUUAUUAUCGAUCGCAGUGAUUCACUCGUGAAUCACAUUUGCUGGGGUAUCAUUUUAUAU-- ...((((((.....)))))).....((..((((...(((.(((...))).)))((((((((....))))))))....))))..))............-- ( -19.30) >DroSec_CAF1 20341 97 - 1 GCUUGAAUCGUAUUGAUUUGCAAUAAUUUCGGUUUGUGUUACUAUCGAUCGCAGUGAUUCACUCGUGAAUCACAUUUGCUGGGGUAUCAUUUUAUAU-- ((..(((((.....)))))))....((..((((.((((...........))))((((((((....))))))))....))))..))............-- ( -22.00) >DroSim_CAF1 21886 97 - 1 GCUUGAAUCGUAUUGAUUUGCAAUAAUUUCGGUUUGUGUUACUAUCAAUCGCAGUGAUUCACUCGUGAAUCACAUUUGCUGGGGUAUCAUUUUAUAU-- ((..(((((.....)))))))....((..((((.((((...........))))((((((((....))))))))....))))..))............-- ( -22.00) >DroEre_CAF1 21093 99 - 1 AUUUGAAUCGAAUUGAUUUGCAAUAAUUUCGGUUUGUGUUACUAUCGAUCGCAGUGAUUCACUCGUGAAUCACAUCUGCUGGGGUAUCAUUUGAUAUCA ...((((((((((.(((........((..((((.((((...........))))((((((((....))))))))....))))..)))))))))))).))) ( -24.10) >DroYak_CAF1 15776 99 - 1 GUUUGAAUCGAAUUGAUUUGCAAUAAUUUCGGUUUGUGUUACUAUCGAUCGCAGUGAUUCACUCGUGAAUCACAUUUGCUGGGGUAUCAUUUUAUAUCG ....(((((.....)))))......((..((((.((((...........))))((((((((....))))))))....))))..)).............. ( -20.60) >consensus GUUUGAAUCGUAUUGAUUUGCAAUAAUUUCGGUUUGUGUUACUAUCGAUCGCAGUGAUUCACUCGUGAAUCACAUUUGCUGGGGUAUCAUUUUAUAU__ ....(((((.....)))))......((..((((.((((...........))))((((((((....))))))))....))))..)).............. (-19.56 = -19.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:32 2006