Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,489,792 – 12,489,912 |
Length | 120 |
Max. P | 0.717409 |
Location | 12,489,792 – 12,489,912 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -43.30 |
Consensus MFE | -27.52 |
Energy contribution | -27.75 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.40 |
Mean z-score | -1.47 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12489792 120 + 22224390 CACUGCCCGCUAUGCCUCGAUCAAUGCCCAUCUGGGCAUCGAGCAGUCGCGGCGUGACGACAUGGAAUCGCUUGGAUACGUGAUGAUGUACUUCAAUCGCGGCGUACUGCCAUGGCAAGG ........((((((......((.((((((....)))))).))((((((((.((((((.(((((...(((((........))))).)))).).)))..))).))).))))))))))).... ( -45.80) >DroGri_CAF1 23417 120 + 1 CACGGCGCGCUAUGCCUCGAUCAAUGCCCAUCUGGGCAUCGAGCAGUCGCGACGUGAUGACAUGGAAUCCUUGGGGUAUGUGAUGAUGUACUUCAAUCGCGGUGUCCUGCCCUGGCAGGG ((((.((((...(((.((((....(((((....))))))))))))..)))).))))..(((((.(.....(((((((((((....)))))))))))...).)))))((((....)))).. ( -50.10) >DroSim_CAF1 20822 119 + 1 NNNNNNNNNNNNNNNNNNNNNNNAUGCCCAUUUGGGCAUCGAGCAGUCGCGGCGUGACGACAUG-AAUCGCUUGGAUACGUGAUGAUGUACUUCAAUCGCAGCGUACUGCCCUGGCAAGG .......................((((((....))))))...((((((((.((((((.(((((.-.(((((........))))).)))).).)))..))).))).)))))(((....))) ( -36.10) >DroWil_CAF1 32209 120 + 1 CACCGCUCGAUAUGCCUCGAUUAAUGCCCAUUUGGGUAUCGAACAAUCACGUCGUGAUGAUAUGGAAUCACUGGGCUAUGUGAUGAUGUACUUCAAUCGUGGUGUUUUGCCCUGGCAGGG ..((..((((......))))....((((.....(((((..(((((.(((((...(((.(.((((..(((((........)))))..))))).)))..))))))))))))))).)))))). ( -36.10) >DroMoj_CAF1 25467 120 + 1 CACAGCCCGCUAUGCCUCGAUCAAUGCCCAUUUGGGCAUCGAGCAGUCCCGUCGCGACGACAUGGAGUCGCUUGGCUAUGUGAUGAUGUACUUCAAUCGGGGCGUGCUGCCCUGGCAGGG .....(((((.(((((((((((.((((((....)))))).))(((...(((..(((((........))))).)))...)))..(((......))).)))))))))))(((....)))))) ( -48.60) >DroAna_CAF1 26079 120 + 1 CACCGCCCGCUAUGCCUCGAUUAAUGCCCAUUUGGGCAUUGAACAAUCACGUCGCGACGACAUGGAGUCCCUUGGCUACGUAAUGAUGUACUUUAAUCGCGGCGUCCUGCCAUGGCAGGG ...........(((((.((((((((((((....)))))))))......((((((..(((.((.((....)).))....)))..)))))).......))).)))))(((((....))))). ( -43.10) >consensus CACCGCCCGCUAUGCCUCGAUCAAUGCCCAUUUGGGCAUCGAGCAGUCGCGUCGUGACGACAUGGAAUCGCUUGGCUACGUGAUGAUGUACUUCAAUCGCGGCGUACUGCCCUGGCAGGG ....................((.((((((....)))))).))...((((((...(((..((((...(((((........))))).))))...)))..))))))...((((....)))).. (-27.52 = -27.75 + 0.23)
Location | 12,489,792 – 12,489,912 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -41.42 |
Consensus MFE | -27.49 |
Energy contribution | -26.83 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.43 |
Mean z-score | -1.75 |
Structure conservation index | 0.66 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12489792 120 - 22224390 CCUUGCCAUGGCAGUACGCCGCGAUUGAAGUACAUCAUCACGUAUCCAAGCGAUUCCAUGUCGUCACGCCGCGACUGCUCGAUGCCCAGAUGGGCAUUGAUCGAGGCAUAGCGGGCAGUG ((.((((...(((((.(((.(((.(((..((((........)))).)))(((((.....)))))..))).))))))))(((((((((....)))))))))....))))....))...... ( -45.00) >DroGri_CAF1 23417 120 - 1 CCCUGCCAGGGCAGGACACCGCGAUUGAAGUACAUCAUCACAUACCCCAAGGAUUCCAUGUCAUCACGUCGCGACUGCUCGAUGCCCAGAUGGGCAUUGAUCGAGGCAUAGCGCGCCGUG .(((((....))))).((((((((((((.(.((((.(((............)))...))))).))).))))))..((.(((((((((....))))))))).)).(((.......)))))) ( -41.60) >DroSim_CAF1 20822 119 - 1 CCUUGCCAGGGCAGUACGCUGCGAUUGAAGUACAUCAUCACGUAUCCAAGCGAUU-CAUGUCGUCACGCCGCGACUGCUCGAUGCCCAAAUGGGCAUNNNNNNNNNNNNNNNNNNNNNNN ........(((((((.(((.(((.(((..((((........)))).)))(((((.-...)))))..))).)))))))))).((((((....))))))....................... ( -36.50) >DroWil_CAF1 32209 120 - 1 CCCUGCCAGGGCAAAACACCACGAUUGAAGUACAUCAUCACAUAGCCCAGUGAUUCCAUAUCAUCACGACGUGAUUGUUCGAUACCCAAAUGGGCAUUAAUCGAGGCAUAUCGAGCGGUG ...(((....)))...((((.(((((((.((........))...((((((((((........)))))((((....))))...........))))).)))))))..((.......)))))) ( -29.40) >DroMoj_CAF1 25467 120 - 1 CCCUGCCAGGGCAGCACGCCCCGAUUGAAGUACAUCAUCACAUAGCCAAGCGACUCCAUGUCGUCGCGACGGGACUGCUCGAUGCCCAAAUGGGCAUUGAUCGAGGCAUAGCGGGCUGUG ..((((....))))(((((((((((.((......))))).....(((..(((..(((.(((((...)))))))).)))(((((((((....)))))))))....)))...).)))).))) ( -46.40) >DroAna_CAF1 26079 120 - 1 CCCUGCCAUGGCAGGACGCCGCGAUUAAAGUACAUCAUUACGUAGCCAAGGGACUCCAUGUCGUCGCGACGUGAUUGUUCAAUGCCCAAAUGGGCAUUAAUCGAGGCAUAGCGGGCGGUG .(((((....))))).(((((((((........)))....(((.(((...((((..(((((((...)))))))...))))(((((((....)))))))......)))...))).)))))) ( -49.60) >consensus CCCUGCCAGGGCAGGACGCCGCGAUUGAAGUACAUCAUCACAUAGCCAAGCGAUUCCAUGUCGUCACGACGCGACUGCUCGAUGCCCAAAUGGGCAUUGAUCGAGGCAUAGCGGGCGGUG ...((((.((((((.....((((..(((.(.....).))).........(((((.....))))).....)))).))))))(((((((....)))))))......))))............ (-27.49 = -26.83 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:30 2006