Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,486,502 – 12,486,607 |
Length | 105 |
Max. P | 0.708083 |
Location | 12,486,502 – 12,486,607 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -20.32 |
Energy contribution | -20.43 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12486502 105 + 22224390 CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAAAC--------------- ((((((((.....))))))))(((((....)))))((((((.......)))))).......((((((((((.........((((...))))))))))))))....--------------- ( -22.90) >DroVir_CAF1 21938 120 + 1 CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAGAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGAUCUCCGGUCCCUCCC ((((((((.....))))))))(((((....)))))((((((.......)))))).......((((((((((.(.....).((((...))))))))))))))..(((.....)))...... ( -25.90) >DroPse_CAF1 18356 105 + 1 CAGAAUAUCAAAAAUUUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUCUGGUAAGC--------------- ((((((.((......(((((((((((....)))))((((((.......)))))).(((.....)))....))))))....((((...))))))))))))......--------------- ( -19.70) >DroMoj_CAF1 20116 108 + 1 CAGAAUAUCAAAAAUCUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAGAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGAGC------------C ....................(((((..........((((((.......)))))).......((((((((((.(.....).((((...)))))))))))))).)))))------------. ( -23.50) >DroAna_CAF1 20181 105 + 1 CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAGGU--------------- ((((((((.....))))))))(((((....)))))((((((.......))))))...(((.((((((((((.........((((...)))))))))))))).)))--------------- ( -26.90) >DroPer_CAF1 18550 105 + 1 CAGAAUAUCAAAAAUUUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUCUGGUAAGC--------------- ((((((.((......(((((((((((....)))))((((((.......)))))).(((.....)))....))))))....((((...))))))))))))......--------------- ( -19.70) >consensus CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGC_______________ ..((((.((............(((((....)))))((((((.......))))))..........)).)))).(((((((.((((...)))))))))))...................... (-20.32 = -20.43 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:28 2006