Locus 480

Sequence ID X_DroMel_CAF1
Location 1,402,211 – 1,402,303
Length 92
Max. P 0.886612
window741

overview

Window 1

Location 1,402,211 – 1,402,303
Length 92
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 76.16
Mean single sequence MFE -27.42
Consensus MFE -16.39
Energy contribution -16.17
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.60
SVM decision value 0.94
SVM RNA-class probability 0.886612
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1402211 92 + 22224390
GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCAUUACCCAACACCCAACACCC-------AACCGC
((((.((--((....((.....))(--(((((......(((((((((((......)))))))))))....))))))........))))..-------)))).. ( -26.50)
>DroSec_CAF1 7601 99 + 1
GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGAGUCUGUCCAACCCCCAACCCCCAACCCCCAACCCCUAACCAC
((((.(.--((.........(((((--(((........(((((((((((......)))))))))))...........))))))))......)).)..)))).. ( -27.97)
>DroYak_CAF1 3361 94 + 1
GGUUUGUGUGUGCAUCCGAAUUGGGGCGGUAAAAUCUCGAGAUCCAGAUAGAUCGAUUUGGGUCCCC------CCCCACACACUUCCCCCGC---ACACCCUC
((...(((((((..........((((.((...........(((((((((......))))))))))))------))))))))))..)).....---........ ( -27.80)
>consensus
GGUUUGU__GUGCAUCCGAAUUGGG__GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCA___CCCAACACCCAACCCCC_______AACCAC
((..(((....))).))...(((((..(((...)))..(((((((((((......))))))))))).......)))))......................... (-16.39 = -16.17 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006