Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,402,211 – 1,402,303 |
Length | 92 |
Max. P | 0.886612 |
Location | 1,402,211 – 1,402,303 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.16 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -16.39 |
Energy contribution | -16.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.60 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1402211 92 + 22224390 GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCAUUACCCAACACCCAACACCC-------AACCGC ((((.((--((....((.....))(--(((((......(((((((((((......)))))))))))....))))))........))))..-------)))).. ( -26.50) >DroSec_CAF1 7601 99 + 1 GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGAGUCUGUCCAACCCCCAACCCCCAACCCCCAACCCCUAACCAC ((((.(.--((.........(((((--(((........(((((((((((......)))))))))))...........))))))))......)).)..)))).. ( -27.97) >DroYak_CAF1 3361 94 + 1 GGUUUGUGUGUGCAUCCGAAUUGGGGCGGUAAAAUCUCGAGAUCCAGAUAGAUCGAUUUGGGUCCCC------CCCCACACACUUCCCCCGC---ACACCCUC ((...(((((((..........((((.((...........(((((((((......))))))))))))------))))))))))..)).....---........ ( -27.80) >consensus GGUUUGU__GUGCAUCCGAAUUGGG__GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCA___CCCAACACCCAACCCCC_______AACCAC ((..(((....))).))...(((((..(((...)))..(((((((((((......))))))))))).......)))))......................... (-16.39 = -16.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006