Locus 48

Sequence ID X_DroMel_CAF1
Location 222,286 – 222,380
Length 94
Max. P 0.665714
window59

overview

Window 9

Location 222,286 – 222,380
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 69.71
Mean single sequence MFE -21.82
Consensus MFE -7.49
Energy contribution -8.76
Covariance contribution 1.27
Combinations/Pair 1.48
Mean z-score -1.80
Structure conservation index 0.34
SVM decision value 0.28
SVM RNA-class probability 0.665714
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 222286 94 - 22224390
GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG--UACGCGUAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG
....(((.((((.((.((.(((....))).)))).)--).)))))..((((((((((((((((.((((....)))).))))))))))))----))))... ( -23.80)
>DroVir_CAF1 116220 83 - 1
GGAAACGACGGCAUGAUUGAUAUGAAAGC---CAAG--CAAGCACCAAGGGCUCGAUGAUGCGA-----------AAUGUAGAUGGGACAUGAAAAUGG-
(....)....((((.(((((.......((---...)--)..((.(....)))))))).))))..-----------.............(((....))).- ( -15.50)
>DroSec_CAF1 17106 92 - 1
GGCAACGACGGCAUGAUUGAUAUCGAUAUGGGCAAG--UACGC--AAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG
.((.((....((...((((....))))....))..)--)..))--..((((((((((((((((.((((....)))).))))))))))))----))))... ( -24.80)
>DroSim_CAF1 13992 94 - 1
GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG--UACGCGUAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG
....(((.((((.((.((.(((....))).)))).)--).)))))..((((((((((((((((.((((....)))).))))))))))))----))))... ( -23.80)
>DroAna_CAF1 25083 93 - 1
GGCAACGACGGCAUGAUUGAUAUGGAUAUGGAUAUGGAUAUGGCCAAGUACAUACCUCACAUAUAUUUUCUCAUAUAUGGAUGUGG-------AUGUGGA
(....)...(((...(((.((((........)))).)))...)))...(((((.((.(((((((((......)))))))..)).))-------))))).. ( -21.20)
>consensus
GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG__UACGCGCAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU____AUAUGGG
(....).....((((.......................(((......)))..(((((((((((.((((....)))).)))))))))))......)))).. ( -7.49 =  -8.76 +   1.27) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:18 2006