Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,483,388 – 12,483,494 |
Length | 106 |
Max. P | 0.691100 |
Location | 12,483,388 – 12,483,494 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -25.10 |
Energy contribution | -24.72 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.60 |
Structure conservation index | 0.86 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12483388 106 + 22224390 CCAACGAGUGUUUUUGACAGAGUAGCAUAUAUAUGCGUAU--AUGCGGGCAAUAGUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU .....(((.......(((((((..((((....))))((((--.(((((((....)))))))))))....((((((.........))))))..)))))))...)))... ( -32.40) >DroSec_CAF1 12966 102 + 1 CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU----GCAU--AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU .....(((.......(((((((..((.....(----((((--.((((((......)))))))))))...((((((.........)))))))))))))))...)))... ( -28.60) >DroSim_CAF1 13778 102 + 1 CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU----GCAU--AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU .....(((.......(((((((..((.....(----((((--.((((((......)))))))))))...((((((.........)))))))))))))))...)))... ( -28.60) >DroEre_CAF1 13546 106 + 1 CCAACGAGUGCUGUUGACAGAGUAGCAUACAUAU--GCAUAAAUGCGGGCAUUAAUCUGCAAUGAAAUGGCAGCUUAGAAGUUCCACUGUGUCUCUGUCUGUCUCUUU .....(((.((....(((((((..((((....))--))....(((((((((......))).......(((.((((....)))))))))))))))))))).)))))... ( -27.60) >consensus CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU____GCAU__AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU .....(((.......(((((((..(((((.......(((....)))((((..(((.((((.........)))).)))...))))...))))))))))))...)))... (-25.10 = -24.72 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:25 2006