Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,466,520 – 12,466,627 |
Length | 107 |
Max. P | 0.546311 |
Location | 12,466,520 – 12,466,627 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -29.72 |
Energy contribution | -29.52 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.18 |
Structure conservation index | 0.94 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12466520 107 + 22224390 CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGUUGGUGCUUUGCAUA ..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... ( -30.50) >DroSec_CAF1 5353 107 + 1 CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGGCAACCAUACGGACUCGUUGGUGCUUUGCAUA ..........((((((....(((.(((((..(((((((...((....((((................)))).))))))))).....))).))..))).))))))... ( -32.89) >DroSim_CAF1 5369 107 + 1 CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGGCAACCAUACGGACUCGUUGGUGCUUUGCAUA ..........((((((....(((.(((((..(((((((...((....((((................)))).))))))))).....))).))..))).))))))... ( -32.89) >DroEre_CAF1 5420 107 + 1 CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGCUGGUGCUUUGCAUA ..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... ( -32.90) >DroYak_CAF1 5418 107 + 1 CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCCAACAAACCGAAAUCAAAGCCAGCGACAACCAUACCGACUCGUUGGUGCUUUGCAUA ..........((((((.......(((((....((((((((....))))..))))..))))).......((((((((.............)))))))).))))))... ( -28.92) >consensus CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGUUGGUGCUUUGCAUA ..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... (-29.72 = -29.52 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006