Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,457,668 – 12,457,760 |
Length | 92 |
Max. P | 0.953180 |
Location | 12,457,668 – 12,457,760 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.85 |
Mean single sequence MFE | -18.96 |
Consensus MFE | -13.74 |
Energy contribution | -14.18 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.31 |
Structure conservation index | 0.72 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12457668 92 + 22224390 GUAUAUAAAAAUAAAGGAAAA--------------AAAAUAGAAGUGAAGUUC--GGAGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA .....................--------------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -17.90) >DroSec_CAF1 10354 94 + 1 GUAUAUAAAAAUAAAAGGAAA-AU-----------AAAAAAGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA .....................-..-----------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -19.20) >DroSim_CAF1 10015 94 + 1 GUACAUAAAAAUAAAAGGAAA-AU-----------AAAAAAGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA .....................-..-----------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -19.20) >DroEre_CAF1 11037 100 + 1 AUAUUUAAACAAAAAAAGAAA-ACC-----GAAAGGGAAGUGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUGCUCGACAUAAUGAUUGUGAUGAGGGGCGAUUA .....................-.((-----....)).............((((--.((....))((....))....((((.((((.....)))).))))))))..... ( -19.40) >DroYak_CAF1 11669 108 + 1 AUAAGAAAAAAACAGAAGAAAAACCGAAGGGAAAGGGAAGUAAAGUGAAGUUUCGGGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGAUGAGGGGCGAUUA .......................((....))....((((.(.......).))))(.((....)).)....((...(((((.((((.....)))).))))).))..... ( -19.10) >consensus GUAUAUAAAAAUAAAAGGAAA_AC___________AAAAAAGAAGUGAAGUUC__GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA .................................................((((...((....))((....))....(((((((((.....)))))))))))))..... (-13.74 = -14.18 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:15 2006