Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,401,228 – 1,401,346 |
Length | 118 |
Max. P | 0.999731 |
Location | 1,401,228 – 1,401,346 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.87 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -27.30 |
Energy contribution | -27.97 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.61 |
Structure conservation index | 0.94 |
SVM decision value | 3.96 |
SVM RNA-class probability | 0.999731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1401228 118 + 22224390 ACGCAU--ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUGCGUC ((((((--(.....((((.................))))...(((((((.(.(((......))).(((((((((((...........)))))))))))...).)))))))..))))))). ( -30.63) >DroPse_CAF1 35360 118 + 1 ACGCAU--ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUACGUC ......--........................(((.......(((((((.(.(((......))).(((((((((((...........)))))))))))...).)))))))....)))... ( -25.60) >DroSec_CAF1 6617 120 + 1 ACGCACUAUCAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCGCAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUGCGUC (((((.........((((.................))))((.(((((((.(...(((....))).(((((((((((...........)))))))))))...).))))))).)).))))). ( -30.13) >DroEre_CAF1 3160 118 + 1 ACGCAU--ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUGCGUC ((((((--(.....((((.................))))...(((((((.(.(((......))).(((((((((((...........)))))))))))...).)))))))..))))))). ( -30.63) >DroWil_CAF1 57942 118 + 1 ACGCAU--ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGUCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUGCGUC ((((((--(.....((((.................))))...(((((((.(.(((......)))((((((((((((...........))))))))))))..).)))))))..))))))). ( -32.03) >DroPer_CAF1 37670 118 + 1 ACGCAU--ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUACGUC ......--........................(((.......(((((((.(.(((......))).(((((((((((...........)))))))))))...).)))))))....)))... ( -25.60) >consensus ACGCAU__ACAAAAUUUCAAAAUCAUCAAAAAGUAGAAAAAUACGCGUUUCAUGCACAUUCGCGGCAUUUAUGAGCCCAUCAACGUCGCUCAUGGAUGAAAGUAACGCGUUUUAUGCGUC ((((((..((......................(((......)))(((((.(.(((......))).(((((((((((...........)))))))))))...).)))))))...)))))). (-27.30 = -27.97 + 0.67)
Location | 1,401,228 – 1,401,346 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.87 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -29.43 |
Energy contribution | -29.07 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.28 |
Structure conservation index | 0.96 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1401228 118 - 22224390 GACGCAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU--AUGCGU .(((((((..(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..))).....)--)))))) ( -31.30) >DroPse_CAF1 35360 118 - 1 GACGUAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU--AUGCGU .(((((((..(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..))).....)--)))))) ( -29.30) >DroSec_CAF1 6617 120 - 1 GACGCAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGCGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGAUAGUGCGU .((((((...(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).))))))))))).....((....(((..(.....)..)))....))..)))))) ( -31.10) >DroEre_CAF1 3160 118 - 1 GACGCAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU--AUGCGU .(((((((..(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..))).....)--)))))) ( -31.30) >DroWil_CAF1 57942 118 - 1 GACGCAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGACGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU--AUGCGU .(((((((..(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..))).....)--)))))) ( -30.90) >DroPer_CAF1 37670 118 - 1 GACGUAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU--AUGCGU .(((((((..(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..))).....)--)))))) ( -29.30) >consensus GACGCAUAAAACGCGUUACUUUCAUCCAUGAGCGACGUUGAUGGGCUCAUAAAUGCCGCGAAUGUGCAUGAAACGCGUAUUUUUCUACUUUUUGAUGAUUUUGAAAUUUUGU__AUGCGU .((((((...(((((((....((((((((..(((.((((.(((....))).)))).)))..))).).)))))))))))...........(((..(.....)..)))........)))))) (-29.43 = -29.07 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:36 2006