Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,442,399 – 12,442,513 |
Length | 114 |
Max. P | 0.569664 |
Location | 12,442,399 – 12,442,513 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 73.30 |
Mean single sequence MFE | -31.10 |
Consensus MFE | -22.36 |
Energy contribution | -23.03 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -0.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12442399 114 - 22224390 AUUCCUAACUACACCGAUUAGUUUUGAAUUUCUUUAUAUCGGACUUACUGCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAACGGCCG ((((..(((((.......)))))..))))...........(((((....((((((..((((((..(((((....))))).))))))...)))))))))))((((....)))).. ( -36.10) >DroSec_CAF1 6636 103 - 1 AUUCCUAACUAU----------GAUAAAUUUCGUAAUAUCG-ACUUACUGCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAACGGCCG .........(((----------((......)))))......-....(((((((((..((((((..(((((....))))).))))))...)))))))))..((((....)))).. ( -32.70) >DroSim_CAF1 9369 98 - 1 AUUCCUAACU---------------AAAUUUCGUAAUAUCG-ACUUACUGCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAACGGCCG ..........---------------.......(((((..((-(((......))))).))))).....(((....)))(((((((((....))))))))).((((....)))).. ( -32.30) >DroEre_CAF1 5475 87 - 1 UUUCUCAACU-----------------------A---AUCG-ACUUACUUCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAGUGGCCG .....(((((-----------------------(---((((-(......))))))).))))......(((....)))(((((((((....))))))))).((((....)))).. ( -29.60) >DroYak_CAF1 8580 103 - 1 UUUCUUAACAACACUGAUGGG-------UUUUUA---GAGG-ACUUACUUCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAGCGGCCG ........(((((((((((((-------(((...---..))-)))))..)))))...))))......(((....)))(((((((((....))))))))).((((....)))).. ( -34.10) >DroMoj_CAF1 8211 100 - 1 AUUGGCAACAACAUUGGCUAG----------CUG---CAAC-ACCUACUGCGAUUGCGUUUAAUUUUGAACAUGUUCGAUUGAAGCUUUGGCUGCGAGCCACCAGGCACCGUUG .(((....)))...(((((.(----------(.(---(...-.......((....))((((....(((((....)))))...))))....)).)).)))))............. ( -21.80) >consensus AUUCCUAACUAC________________UUUCUU___AUCG_ACUUACUGCGGUUGCGUUGCAUCUUGAACAUGUUCGACUGCAGCUUGGGCUGCGGUCCGCCGGGAACGGCCG ..............................................(((((((((..((((((..(((((....))))).))))))...)))))))))..((((....)))).. (-22.36 = -23.03 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:07 2006