Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,423,963 – 12,424,083 |
Length | 120 |
Max. P | 0.861263 |
Location | 12,423,963 – 12,424,083 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -50.03 |
Consensus MFE | -47.39 |
Energy contribution | -47.83 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.95 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12423963 120 - 22224390 UAUCACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAGCGUUCGAA ..((...(((.(((((...((((.((((((((((....(((....)))))))))..))))..)))).))))).)))....((((((((((((.......))))))))))))......)). ( -51.60) >DroSim_CAF1 2688 120 - 1 UAUCACCGGACCCGUCAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAACGUUCGAA ..((...(((.(((.((((.(((.((((((((((....(((....)))))))))..))))..)))))))))).)))....((((((((((((.......))))))))))))......)). ( -51.50) >DroYak_CAF1 2906 120 - 1 UAUUACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUUUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUAUGCGCUUGUCGAGCGUUCGAA ......((((((......))))((((((((((......(((....)))((((.......)))).(((((((.(.(((((......))))).)...))))))))))))))).))...)).. ( -47.00) >consensus UAUCACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAGCGUUCGAA .......(((.(((((...((((.((((((((((....(((....)))))))))..))))..)))).))))).)))....((((((((((((.......))))))))))))......... (-47.39 = -47.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:00 2006