Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,421,251 – 12,421,371 |
Length | 120 |
Max. P | 0.699270 |
Location | 12,421,251 – 12,421,371 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -48.27 |
Consensus MFE | -45.72 |
Energy contribution | -44.83 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.74 |
Structure conservation index | 0.95 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12421251 120 - 22224390 ACAGUAUGCGGGCCAGGCGUCGCCAACGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC .......((((((........))).(((((((((.((((((..(..((.((((.(......)))))))..).((((((((.......)))))))).....)))))).)))))))))))). ( -47.30) >DroSim_CAF1 113 120 - 1 ACAGUAUGCGAGCCAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC .......((((((...)).))))..(((((((((.((((((..(..((.((((.(......)))))))..).((((((((.......)))))))).....)))))).))))))))).... ( -47.40) >DroYak_CAF1 121 120 - 1 ACAGCAUGCGGGCGAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGACGUAAUCUCACGCCCGAUACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGCCGUC .......((((((((....))))).(((((((((.((((((.....((.(((...........)))))....((((((((.......)))))))).....)))))).)))))))))))). ( -50.10) >consensus ACAGUAUGCGGGCCAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC .......((((((...)).))))..(((((((((.((((((..(..((.(((...........)))))..).((((((((.......)))))))).....)))))).))))))))).... (-45.72 = -44.83 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:59 2006