Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,400,362 – 1,400,471 |
Length | 109 |
Max. P | 0.879860 |
Location | 1,400,362 – 1,400,471 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.00 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -14.67 |
Energy contribution | -15.73 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.99 |
Structure conservation index | 0.66 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1400362 109 + 22224390 UUAAAAUGUGCAACUAUGACAGCUCCUCC---UCCUCCUCCUUUUGAUCCGUCCUCAUUCGCAACCGCCGGAGCUCAUCCUU-UCCCGGCUGGCCAUUGCCAUUGCCAUUUAU ...(((((.((((..((((..(((((...---............(((.......)))...((....)).)))))))))....-....(((........))).))))))))).. ( -22.00) >DroSec_CAF1 5771 106 + 1 UUAAAAUGUGCAACUAUGACAGCUCCUCCCCCUCCUCCUCCUGCUGAUCCCUCC------GCAUCCGCCGGAGCUCAUCCUU-UCCCGGCUGGCCAUUGCCAUUGCCAUUUAU ...(((((.((((......((((...................))))........------......(((((...........-..)))))((((....))))))))))))).. ( -23.53) >DroEre_CAF1 2275 97 + 1 UUAAAAUGUGCAACUAUGACAGCUCCUCCCGCUUCUACUCCCGC---UCCCACCGC------AUCCGCCGGAGCUCAUCCUG-UCCAGGCUGGCCAUU------GCCAUUUAU ...(((((.((((....((((((.......))..........((---(((....((------....)).)))))......))-))..((....)).))------))))))).. ( -21.40) >DroYak_CAF1 1357 100 + 1 UUAAAAUGUGCAACUAUGACAGCUCCUCCUGCC----CUCCUGC---AUCCACCGCACUCACAUCCGCCGGAGCUCAUCCUUUUGCAGGCUGGCCAUU------GCCAUUUAU ...(((((.((((.......((......))(((----..(((((---(......((..........)).(((.....)))...))))))..)))..))------))))))).. ( -22.20) >consensus UUAAAAUGUGCAACUAUGACAGCUCCUCCCGCUCCUCCUCCUGC___UCCCACCGC____GCAUCCGCCGGAGCUCAUCCUU_UCCAGGCUGGCCAUU______GCCAUUUAU ...(((((.((((..(((.(((((.............((((.((......................)).))))..............)))))..))).....))))))))).. (-14.67 = -15.73 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:34 2006