Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,420,407 – 12,420,500 |
Length | 93 |
Max. P | 0.650209 |
Location | 12,420,407 – 12,420,500 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 67.85 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -13.37 |
Energy contribution | -16.04 |
Covariance contribution | 2.67 |
Combinations/Pair | 1.35 |
Mean z-score | -1.85 |
Structure conservation index | 0.34 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12420407 93 + 22224390 UUGCACAUUGGCAGGCGAUGAUUGCUGCUCGUUCGCUGCUGUUGGGCCGAC---------------GGAAGUGGCAAAGUUAGCUUGUGCUUCUUCGGCAGCCAGUCU ......((((((.((((((((.......))).)))))........(((((.---------------(((((((((.......)))...))))))))))).)))))).. ( -31.50) >DroVir_CAF1 8519 78 + 1 G-GCGCCUGUACAGGACGUCGCUGCUGCGUGC-------U----G-GCG-----------------GCCAACGGCAGCGUCAGCUUGUGCUUCUUGGGCAGGCAAUCG .-..(((((..(((((.(.(((.((((.((((-------(----(-.((-----------------.....)).))))))))))..)))).)))))..)))))..... ( -37.50) >DroSec_CAF1 14441 93 + 1 UUGCCCAAUGGCUGGCGAAGAUUGCUGCUCGUUCGCUGCUGUUGGACAGAC---------------GAAAGUGGCAGCGUUAGCUUGUGCUUCUUCGGCAGCCAGUCU ........((((((.((((((..((((((..((((((((.....).))).)---------------)))...))))))...(((....))))))))).)))))).... ( -40.80) >DroEre_CAF1 14745 93 + 1 UUGCUCGAGGGCAGGCGAUGAUUGCUGCUCGUUCGCUGCUGUUGGAGCGGC---------------GGAAGUGGCAGCGUUAGCUUGUGCUUCUUCGGCAGCCAGUCA ((((.(((((((((((((((.((((..((..(((((((((.....))))))---------------)))))..)))))))).))))))....)))))))))....... ( -41.60) >DroYak_CAF1 14398 93 + 1 UUGCUCGAUGGCAGGCGAUGAUUGCUGCUCGUUCGCUGCUGCUGGAGCGGC---------------GGAAGUGGCAGCGUUAGCUUGUGUUUCUUUGGCAGCCAGUCU (((((.((..((((((((((.((((..((..(((((((((.....))))))---------------)))))..)))))))).))))))...))...)))))....... ( -36.80) >DroPer_CAF1 18210 102 + 1 CUGCCCAUAGGCAGGCGCUGGCUGCCGUUGGACCGUU------GGGCCAGCAGGGGGACCAUGGGGACCAGGGGGAGCGUCAGUUUGUGUUUCUUGGGCAGGCAAUCC (((((((..((.((((((..((((.((((...((.((------((.((..((((....)).)).)).)))).)).)))).))))..)))))))))))))))....... ( -47.20) >consensus UUGCCCAAUGGCAGGCGAUGAUUGCUGCUCGUUCGCUGCUGUUGGACCGGC_______________GGAAGUGGCAGCGUUAGCUUGUGCUUCUUCGGCAGCCAGUCU (((((....))))).....((((((((((....((((((..((..........................))..))))))..(((....))).....))))).))))). (-13.37 = -16.04 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:56 2006