Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,418,630 – 12,418,740 |
Length | 110 |
Max. P | 0.998320 |
Location | 12,418,630 – 12,418,740 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 94.63 |
Mean single sequence MFE | -32.94 |
Consensus MFE | -33.30 |
Energy contribution | -32.74 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 1.01 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12418630 110 + 22224390 AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUGUAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUAUGUAUA- ...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))..........- ( -32.60) >DroSec_CAF1 12702 106 + 1 AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA- ...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -32.60) >DroSim_CAF1 14009 106 + 1 AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUUCAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA- ...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -32.60) >DroEre_CAF1 12986 106 + 1 AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGGCUCAAGUGCCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA- ...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -34.70) >DroYak_CAF1 12549 107 + 1 AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGGCUCAAGUGUCUUGUAGAAGCGGUUAAUUGCAAGCGUUUCGAUCCUAUA----UAU ...((.(((.((.((((..((((.(((.(((....))).))).))))..)))))).)..............((((((.((......)).)))))))).))....----... ( -32.20) >consensus AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA____UA_ ...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))........... (-33.30 = -32.74 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:55 2006