Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,405,017 – 12,405,109 |
Length | 92 |
Max. P | 0.745940 |
Location | 12,405,017 – 12,405,109 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 97.28 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -19.05 |
Energy contribution | -19.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.92 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12405017 92 - 22224390 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGAUUUUUUAAAUCACAGCGAAUCGCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((............((((.....))))..(((((((...)))))))))))). ( -21.60) >DroSec_CAF1 7686 91 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU-UUAAAUCACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((......)-)))))....(((((((...)))))))))))). ( -20.60) >DroEre_CAF1 8178 92 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUUUUUAAAUCACAGCGAAUCUCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((.......))))))....(((((((...)))))))))))). ( -20.10) >DroYak_CAF1 8043 91 - 1 GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU-UUAAAUUACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((......)-)))))....(((((((...)))))))))))). ( -20.60) >consensus GGCAAAAACAACUGGCAACACACCGAUAACGGAGUUGCAGUGGAAUUUUAAACAGACUU_UUAAAUCACAGCGAAUCCCAUUCGCUCACUGA ........((((((....)...(((....))))))))(((((....((((((.......))))))....(((((((...)))))))))))). (-19.05 = -19.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:50 2006