Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,398,939 – 12,399,046 |
Length | 107 |
Max. P | 0.717456 |
Location | 12,398,939 – 12,399,046 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 74.46 |
Mean single sequence MFE | -47.48 |
Consensus MFE | -23.44 |
Energy contribution | -23.58 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.41 |
Mean z-score | -1.81 |
Structure conservation index | 0.49 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12398939 107 - 22224390 CGCCGCAGGCGACGCCGUCGGAAAAGUCGCCCACGACGUGGCGGUGGAAUGG---GUGUCACCAGUUGCGUCGGCGAUCCUGGUGGCGACAAUAUGUCGUAAGUUUA----AAU- .(((((.((((((.((...))....))))))..(((((..(((((((.....---...))))).))..))))).........)))))(((.....))).........----...- ( -43.70) >DroVir_CAF1 5560 109 - 1 CGUCGGCGGCGGCGUCGCCGCAAGAGCCGGCCGCGACGCAGCGGCGGCAUGGCCAGUGUGACCAGCUGUGUGGGCGAUGCCGGUGGCGAUAACAUGUCGUAAGUACA----GC-- .((((.((.((((((((((......((((.((((......))))))))...((((((.......)))).)).)))))))))).)).))))....((((....).)))----..-- ( -54.50) >DroWil_CAF1 1718 111 - 1 CGUCGACGGCGGCGUCGCCGAAAGAGUCGACCACGUCGAGGCGGUGGCAUGA---GUGUCACCAGCUGUGUAGGAGACGGCGGUGGUGAUAAUAUGUCGUAAGUUCUA-CAAACA ((((..(((((..((((((....).).))))..))))).))))..((((((.---.((((((((.((((...(....).)))))))))))).))))))(((.....))-)..... ( -43.90) >DroYak_CAF1 1912 107 - 1 CGCCGCAGGCGACGCCGGCGCAAGAGUCGUCCGCGACGUGGCGGUGGCAUGG---GAGUCACCAGUUGCGUCGGUGAUCCUGGCGGCGACAAUAUGUCGUAAGUUGA----AAU- .((((((((...(((((((((((..((((....)))).....((((((....---..))))))..)))))))))))..))).)))))(((.....))).........----...- ( -52.20) >DroMoj_CAF1 4241 109 - 1 CGCCGGCGUCGACGUCGACGCAAGAGCCGACCGCGACGCAGCGGCGGCAUGGCCAGUGUUACCAGCUGCGUGGGCGAUGCUGGCGGUGAUAACAUGUCGUAAGUAAA----GC-- ((((.((((((....))))))....((((.((((......))))))))...(((((((((.(((......)))..)))))))))))))...................----..-- ( -49.10) >DroAna_CAF1 2552 111 - 1 CGAAGGAGACGCCGCAGGCGGAAGAGCCGGCCCCGACGCAGUGGGGGCAUGG---GCGUUACCAGUUGUGUUGGUGAUCCAGGAGGCGAUAAUAUGUCGUAAGUAUUACCUAAU- ....((.((((((.(((((......))).(((((.((...)).))))).)))---))))).)).........((((((.(.....(((((.....)))))..).))))))....- ( -41.50) >consensus CGCCGGAGGCGACGCCGCCGCAAGAGCCGACCGCGACGCAGCGGUGGCAUGG___GUGUCACCAGCUGCGUCGGCGAUCCUGGUGGCGAUAAUAUGUCGUAAGUACA____AAU_ (((((..((((((.....(....).)))).)).(.(((((((((.(((((.....))))).)).))))))).).......)))))(((((.....)))))............... (-23.44 = -23.58 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:45 2006