Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,396,989 – 12,397,105 |
Length | 116 |
Max. P | 0.813712 |
Location | 12,396,989 – 12,397,105 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.55 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -22.43 |
Energy contribution | -22.52 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.22 |
Mean z-score | -1.68 |
Structure conservation index | 0.74 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12396989 116 - 22224390 GAACUGUACCGCUCCAAUAGCUUCAAGUUCGAGCGAUUCGAGCGCAAGGAGUGCCUGGAGGAGCUGUCCAACACGUUGCAGAAGCAGGUGAGUCAUGAAGCCCAACAUGAAUAUUC ...((.((((.(((((...(((((..(((((((...)))))))....)))))...)))))..(((...(((....)))....))).))))))(((((........)))))...... ( -31.50) >DroGri_CAF1 1 87 - 1 GAGCUCUAUCGUUCGAAUAGCUUUAAGUUCGAGCGUUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACAUUGCAGAAGCAG----------------------------- (((((((..(((((((((........)))))))))..(((((.(((.....)))))))))))))))..........(((....))).----------------------------- ( -33.60) >DroWil_CAF1 1 87 - 1 GAGCUCUAUCGUUCCAAUAGCUUCAAGUUUGAACGUUUCGAGCGCAAGGAGUGCCUCGAAGAGCUCUCCAAUACAUUGCAGAAACAG----------------------------- (((((((..(((((.(((........))).)))))..(((((.(((.....))))))))))))))).....................----------------------------- ( -25.80) >DroYak_CAF1 1 87 - 1 GAACUGUACCGCUCCAACAGCUUCAAGUUCGAGCGAUUCGAGCGCAAGGAGUGCCUGGAGGAGUUGUCCAACACGUUGCAGAAGCAG----------------------------- ...(((((.(((((((...(((((..(((((((...)))))))....)))))...)))))..(((....))).)).)))))......----------------------------- ( -26.80) >DroMoj_CAF1 1 87 - 1 GAGCUCUAUCGCUCGAACAGCUUCAAGUUUGAGCGCUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACGUUGCAGAAGCAG----------------------------- (((((((..(((((((((........)))))))))..(((((.(((.....)))))))))))))))..........(((....))).----------------------------- ( -35.50) >DroAna_CAF1 1 87 - 1 GAGCUCUACCGCUCCAACAGCUUCAAGUUUGAGCGUUUUGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACCUUACAGAAGCAG----------------------------- (((((((..(((((.(((........))).)))))..(((((.(((.....))))))))))))))).....................----------------------------- ( -28.10) >consensus GAGCUCUACCGCUCCAACAGCUUCAAGUUCGAGCGUUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACGUUGCAGAAGCAG_____________________________ ((((......)))).....(((((..(((((((...)))))))((((((((.(((.....).)).))))......)))).)))))............................... (-22.43 = -22.52 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:44 2006