Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,392,121 – 12,392,212 |
Length | 91 |
Max. P | 0.522256 |
Location | 12,392,121 – 12,392,212 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -15.67 |
Consensus MFE | -2.76 |
Energy contribution | -2.56 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.25 |
Mean z-score | -1.49 |
Structure conservation index | 0.18 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12392121 91 + 22224390 UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCAGUCACAAUCCGAAGGAUAUAUGUAUAUAUAUAUAUAUCCC--UAU-----CCCC ................((((((.............(((......)))..........(((((((((((....))))))))))).--)))-----))). ( -21.80) >DroPse_CAF1 7774 83 + 1 UGCCAAGCCAAUAAAAGGGAUAAAAUUGAAAAGCAUCCGGGACACACACACUUCGAAGGAGGAGGAU----A----CCUCACAC--CAU-----CCCA ................(((((.....(((...(.(((((.....).....((((....)))).))))----.----).)))...--.))-----))). ( -15.80) >DroSec_CAF1 5881 91 + 1 UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCAGUCACAAUCCCAAGGAUAUAUGUAUAUAAAUAUAUAUCCC--UAU-----CCCC ................((((((.............(((......)))..........((((((((((......)))))))))).--)))-----))). ( -20.90) >DroEre_CAF1 5780 94 + 1 UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAAGCAGACAGCGCACUCACAGUCCCAAGGAUAUAUGU----CCCUAUCUCCAAUAAUAUGUACAUACG ((((...........(((((((....(((...((.....))....)))..((((...))))...)))----)))).............))))...... ( -13.95) >DroYak_CAF1 10677 89 + 1 UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCACUCACAAUCCCAAGGAUACACAU----ACAUAUAUAUCACUAUAU-----CACC ....((..........(((((.....((.....))((........))...))))).((((((.....----.......)))).))...)-----)... ( -5.90) >consensus UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCACUCACAAUCCCAAGGAUAUAUGU____ACAUAUAUAUCAC__UAU_____CCCC (((....((.......)).......(((.....))).....)))......((((...))))..................................... ( -2.76 = -2.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:41 2006