Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,389,870 – 12,389,963 |
Length | 93 |
Max. P | 0.808993 |
Location | 12,389,870 – 12,389,963 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 76.59 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -9.10 |
Energy contribution | -9.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.31 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12389870 93 + 22224390 ACUGGGUCUUCCAUUUUCGGAUCCC-CCUCUCCUUAGUAGGAGGGGUCGGGGUGCGGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG ..(((.....)))((..((.(((((-((((((((....))))))))..))))).))..))...(((..(((((....))))))))......... ( -35.30) >DroSec_CAF1 3832 80 + 1 ACUGGGUCUUCUAUUUUCGGAUCCC-CCUCUUCUGAA--GG--GGGACA-------GA--CGGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG ...((((((.........))))))(-(((((.....)--))--)))(((-------((--((.(((..(((((....)))))))).))))))). ( -31.20) >DroSim_CAF1 21588 81 + 1 ACUGGGUCUUCUAUUUUCGGAUGCC-CCUCUUCUGAA--GG-GGGGACG-------GA--CGGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG .(((((.........)))))...((-(((((.....)--))-))))(((-------((--((.(((..(((((....)))))))).))))))). ( -30.30) >DroEre_CAF1 3833 74 + 1 ACUGGGUCUUCUAUUUUCGGUGGCCCCCUCCUUUC--------------------GAGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG ((((((.........))))))(((((((((.....--------------------))))))..(((..(((((....))))))))..))).... ( -22.00) >DroYak_CAF1 8768 85 + 1 ACUGGGUCUUCUAUUUUCGGAGGUC-CUUCCUUUGGC--UU--GGGUUG----GAGGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG ...((..((((.......))))..)-).(((((..((--..--..))..----)))))((..((((..(((((....)))))))).)..))... ( -28.20) >consensus ACUGGGUCUUCUAUUUUCGGAUGCC_CCUCUUCUGAA__GG__GGGACG______GGGGGGUGGCAACUGCAAUCAUUUGCAUGCAUGUCUGUG .(((((.........)))))...........................................(((..(((((....))))))))......... ( -9.10 = -9.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:40 2006