Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,387,796 – 12,387,891 |
Length | 95 |
Max. P | 0.910935 |
Location | 12,387,796 – 12,387,891 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.45 |
Mean single sequence MFE | -19.20 |
Consensus MFE | -9.64 |
Energy contribution | -10.57 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.20 |
Mean z-score | -1.89 |
Structure conservation index | 0.50 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12387796 95 - 22224390 -AACAAAAAAAAAAUAACAUUGACAGUGCGAUCGAUAAAA--GUAUCGAUAAUAUCGAUAAUUUUAGA-AAUUAACAAGCACUGAUGUUGGGAUUUCUU--------------------- -.............((((((...((((((.(((((((...--.)))))))......(.(((((.....-))))).)..)))))))))))).........--------------------- ( -19.20) >DroSec_CAF1 1809 92 - 1 -AACAAAA---AUUUAGCUUUGACAAUGCGAUCGAUAAAA--AUAUCGAUAAUAUCGAUAAUUUUAGA-UUUCAGCAAUCACCGAUGCUGGAAUUAAUA--------------------- -.......---.....((.........))......(((((--.(((((((...))))))).)))))((-((((((((........))))))))))....--------------------- ( -19.30) >DroSim_CAF1 19565 82 - 1 -AA---------AGUAGCAUCGACAAUGCGAUCGAUAAAAGCAUCUCGAUAUUAUCGAU------AGA-UUUCAGCAAGCACCGAUGCUGGGAUUACUU--------------------- -.(---------(((.((((.....)))).((((((((...(.....)...))))))))------.((-(..(((((........)))))..)))))))--------------------- ( -20.80) >DroEre_CAF1 1841 115 - 1 CAACAAGC---GAGUAGCAUUGACAAUCCGAUCGAUUAAA--GUAUCGAUAAUAUCGAUAAUUUUAGAAUUUUAGCAAGCACCGAGGGUGGAAUUAUCUUGAUAAAUACUAAAUACAGAG ......((---.....))(((((.......((((((....--..))))))....)))))...(((((.((((...((((((((...)))).......))))..)))).)))))....... ( -17.51) >consensus _AACAAAA___AAGUAGCAUUGACAAUGCGAUCGAUAAAA__AUAUCGAUAAUAUCGAUAAUUUUAGA_UUUCAGCAAGCACCGAUGCUGGAAUUACUU_____________________ ..................(((((.......(((((((......)))))))....)))))..........((((((((........))))))))........................... ( -9.64 = -10.57 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:39 2006