Locus 4763

Sequence ID	X_DroMel_CAF1
Location	12,386,642 – 12,386,735
Length	93
Max. P	0.739599

overview

Window 2

Location	12,386,642 – 12,386,735
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	96.99
Mean single sequence MFE	-27.66
Consensus MFE	-25.61
Energy contribution	-25.81
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.27
Structure conservation index	0.93
SVM decision value	0.45
SVM RNA-class probability	0.739599
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12386642 93 - 22224390
GUCUGCAACCCGCUGAGUGGUGCAUUUUCGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGCUGCGGCUAAACUAAUUUUGGCUACAACGUA
....((((((.((..((((((.................))))))..))....))).....)))((..((((((.....))))))..))..... ( -23.63)
>DroSec_CAF1 635 93 - 1
GUCCGCAACCCGCUGAGUGGUGCAUUUUCGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGCUGCGGCUAAGCUAAUUUUGGCUACAACGCA
....((.....((..((((((.................))))))..))...((((((((((...((......))..))))))))))....)). ( -29.73)
>DroSim_CAF1 18406 93 - 1
GUCUGCAACCCGCUGAGUGGUGCAUUUUCGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGCUGCGGCUAAGCUAAUUUUGGCUACAACGCA
....((.....((..((((((.................))))))..))...((((((((((...((......))..))))))))))....)). ( -29.43)
>DroEre_CAF1 665 93 - 1
GUCUGCAACCCGCUGAGUGGUGCAUUUUCGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGUUGCGGCUAAGCUAAUUUUGGCUACAACGAA
...((((..((((...))))))))..(((((.((...((((....))))...(((((((((...((......))..))))))))))).))))) ( -27.20)
>DroYak_CAF1 5821 93 - 1
GCCUGCAACCCGCUGAGUGGUGCAUUUUGGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGCUGCGGCUAAGCUAAUUUUGGCUACAACGAA
(((.(((..((((...)))).(((((((((..(....((((....))))..)..)))))))))))))))..(((((....)))))........ ( -28.30)
>consensus
GUCUGCAACCCGCUGAGUGGUGCAUUUUCGUAGUACAUGCCACUUGGCACUUGGUCAAAAUGCUGCGGCUAAGCUAAUUUUGGCUACAACGAA
...........((..((((((.................))))))..))...((((((((((...((......))..))))))))))....... (-25.61 = -25.81 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:38 2006