Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,380,361 – 12,380,473 |
Length | 112 |
Max. P | 0.953950 |
Location | 12,380,361 – 12,380,473 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -16.77 |
Energy contribution | -17.00 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.17 |
Mean z-score | -2.05 |
Structure conservation index | 0.71 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12380361 112 - 22224390 AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA-ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCACC------- ..............(((((((........((((.....-...))))...(((((((..(((((....)))))..)))))))......))))(((((......))))))))...------- ( -26.20) >DroSim_CAF1 11818 112 - 1 AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA-ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCCCC------- ..............(((((((........((((.....-...))))...(((((((..(((((....)))))..)))))))......))))(((((......))))))))...------- ( -25.30) >DroWil_CAF1 22733 115 - 1 AUCAACGAAAUGAUGAAAGCAAACACAAACACAAACAAAACAAGUGCGCAUGUU---GUUGUAAUAUUGCGAAAUUGAUUUUUCCCUCGCUAGC--UUCCUUCAGCUUUCUCUUCACUUC ......(((.(((.((((((..........((((....((((.(....).))))---.))))......((((....((....))..))))....--........))))))...))).))) ( -18.90) >consensus AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA_ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCACC_______ ..............((((((.........(((...........)))((((((((((..(((((....)))))..)))))))...........))).........)))))).......... (-16.77 = -17.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:34 2006