Locus 4756

Sequence ID X_DroMel_CAF1
Location 12,364,550 – 12,364,658
Length 108
Max. P 0.609787
window7794

overview

Window 4

Location 12,364,550 – 12,364,658
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -20.90
Consensus MFE -2.74
Energy contribution -2.94
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.48
Structure conservation index 0.13
SVM decision value 0.15
SVM RNA-class probability 0.609787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12364550 108 - 22224390
AUAAUGUGUGGCAAAGCUUAAGUAAUUCUAUAAAUAAACGUAGCUAAAGAA---AGACAAAUUGCAAAAGAGUGCAGCUCAAGACGAGAGCUUAGCUUAUGUAUAUUUAAU
..............................((((((.((((((((((....---........((((......))))((((.......))))))))).))))).)))))).. ( -20.40)
>DroSec_CAF1 7893 108 - 1
AUACUGUGUGGAAAAGCUUAAGUAAUUCUAUAAAUAAACGUAGCUAAGGAA---AGACAAAUUGCAAAAGAGUGUGGUUUAAGACGAAAGCUUAGCUUAUGUAUAUUUAAU
.((((..((......))...))))......((((((.(((((((((((...---....((((..((......))..))))....(....))))))).))))).)))))).. ( -23.70)
>DroSim_CAF1 1034 108 - 1
AUACUGUGUGGAAAAGCUUAAGUAAUUCUAUAAGUAAACGUAGCUAAGGAA---AGACAAAUUGCAAAAGAGUGUGGUUCAAGACGAACGCUUAGCUUAUGCAUAUUUAAU
.((((.(((((((..((....))..)))))))))))..((((((((((...---..(((..((....))...))).((((.....)))).)))))).)))).......... ( -21.10)
>DroEre_CAF1 7040 94 - 1
AGAUUGUGUGGAAACGCUUAAGUGAUUCUAUAUAUUAACGUACCUAGGGAG---AGAGAAAUCGCAAAGCAGCAUGGCUCAAGCCGAAAUAU--------------CUAAU
....(((((((((.(((....))).)))))))))..........((((...---.((....))((......)).((((....)))).....)--------------))).. ( -19.40)
>DroYak_CAF1 1205 109 - 1
AUAAUGUGUUGAAAAGCUCAAUUUAUUCUAUGAAUAAACGUU--UAGAUACAGAAGACAAAUUGCAAAAGAGCAUGGGACAACCCAAUAGAUUAGGUUUUGUAUGCGUAAU
....((.(((....))).))..((((((...))))))((((.--...((((((((.......(((......)))((((....))))..........))))))))))))... ( -19.90)
>consensus
AUAAUGUGUGGAAAAGCUUAAGUAAUUCUAUAAAUAAACGUAGCUAAGGAA___AGACAAAUUGCAAAAGAGUGUGGCUCAAGACGAAAGCUUAGCUUAUGUAUAUUUAAU
......(((((((..((....))..)))))))...............................((......))...................................... ( -2.74 =  -2.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:31 2006