Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,359,517 – 12,359,614 |
Length | 97 |
Max. P | 0.837799 |
Location | 12,359,517 – 12,359,614 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.41 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -20.95 |
Energy contribution | -23.84 |
Covariance contribution | 2.89 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.71 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12359517 97 + 22224390 UCAUAUGUUGCUAACGGAAAUUGAUGUUUGGCCUUUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAAUGCAGAUGC .......(((((((.((..(........)..)).))))))).((((((((((...)))))))))).....(((((((.((....)).)))))))... ( -35.30) >DroSim_CAF1 5387 97 + 1 UGCUAUGUUGCUAACGGAAAUUGAUGUUUGGCCCUUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAGUCUUAAAAU .(((.(((..(((.(((((..((((....((((((((.(((((....))))).)).))))))))))...)))))....)))..))))))........ ( -28.70) >DroYak_CAF1 7228 83 + 1 UGAUAUGUUGCUAGCGGAAAUUGA--------------CGGAGACAACUCUGGUGCAGGGUUGUCAUUGUUCUGCAUGCGAAGACAAGUGCAGAUGC .......((((..((((((..(((--------------((....)(((((((...)))))))))))...))))))..))))................ ( -24.80) >consensus UGAUAUGUUGCUAACGGAAAUUGAUGUUUGGCC_UUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAGUGCAGAUGC .......(((((((.((..............)).))))))).((((((((((...)))))))))).....(((((((.((....)).)))))))... (-20.95 = -23.84 + 2.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:30 2006