Locus 4754

Sequence ID X_DroMel_CAF1
Location 12,356,583 – 12,356,674
Length 91
Max. P 0.509835
window7792

overview

Window 2

Location 12,356,583 – 12,356,674
Length 91
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 78.17
Mean single sequence MFE -34.65
Consensus MFE -23.59
Energy contribution -24.52
Covariance contribution 0.92
Combinations/Pair 1.29
Mean z-score -1.07
Structure conservation index 0.68
SVM decision value -0.05
SVM RNA-class probability 0.509835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12356583 91 + 22224390
----UUGUGGCACGGGCAGCGGUUGCUGCUCAACCUCUUCGUCGAUGUCCGCCUCGUCGUCGGAGGAUUUCGGAGCCGAGGAGUCUGUAAAUCGU
----(((..(.(((((((((....)))))))..((((..(..(((.((((.((........)).)))).)))..)..)))).)))..)))..... ( -34.40)
>DroSec_CAF1 3627 89 + 1
----UUGUGGCACGGGCAGCGGUUGCUGCUCAACCUCCUCGUCGAUGUCCGCCUCGUCGUCGGAGGAUUUCGGAGCCGAGGAGUCUGCAAAUG--
----(((..(...(((((((....)))))))...(((((((((((.((((.((........)).)))).))))...))))))).)..)))...-- ( -38.50)
>DroEre_CAF1 3677 89 + 1
----CUGUGGCACGGGCAGCGGCUGCUGUUCCACCUCCUCGUCGAUGUCCGCCUCGUCGUCGGAGGAUUUCGGCGCCGAGGAGUCUGCAAGUG--
----.((..(.(((((((((....)))))))..((((..((((((.((((.((........)).)))).))))))..)))).)))..))....-- ( -37.50)
>DroYak_CAF1 3718 89 + 1
----UUGUGGCACGGGCAGCGGUUGCUGCUCAACCUCCUCGUCGAUGUCCGCCUCGUCGUCGGAUGACUUCGGAGCCGAGGAGUCUGCAAAUG--
----(((..(...(((((((....)))))))...(((((((((((.(((..((........))..))).))))...))))))).)..)))...-- ( -35.50)
>DroMoj_CAF1 4078 89 + 1
UGCU----GCUGUUGGUGGUGCGGCACGCUCUACCUCCUCGUCUAUGUCCGCCUCCUCGUCAGAGGACUUGGGUGCCGAGGAAUCUGCAAAAC--
...(----((....(((((.(((...))).)))))((((((....(..(((..(((((....)))))..)))..).))))))....)))....-- ( -33.20)
>DroAna_CAF1 9140 89 + 1
----AACUCCAACUGGCAGAGGUGGCUGUUCGACUUCCUCGUCUAUAUCCGCCUCGUCAUCAGAGGACUUCGGUGCAGAAGAGUCUGAAAAGG--
----....((...((((.(((((((.(((..(((......))).))).)))))))))))(((((...((((......))))..)))))...))-- ( -28.80)
>consensus
____UUGUGGCACGGGCAGCGGUUGCUGCUCAACCUCCUCGUCGAUGUCCGCCUCGUCGUCGGAGGACUUCGGAGCCGAGGAGUCUGCAAAUG__
.............(((((((....)))))))...(((((((((((.((((.((........)).)))).))))...)))))))............ (-23.59 = -24.52 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:29 2006