Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,355,809 – 12,355,909 |
Length | 100 |
Max. P | 0.589806 |
Location | 12,355,809 – 12,355,909 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 66.84 |
Mean single sequence MFE | -35.93 |
Consensus MFE | -22.43 |
Energy contribution | -22.43 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.21 |
Mean z-score | -1.06 |
Structure conservation index | 0.62 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12355809 100 + 22224390 CGCCCAAC-----GUGGCUUCAUUUGAACGUAUUGACUUACCUGGUUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUAAGCAGUUCGCCCUCGCCGGCGUCG ((((....-----..(((((((...(((((((......)))...))))..----...)))----))))((------(((.(((((((.((......)).))))))).)))))))))... ( -40.00) >DroSec_CAF1 2888 83 + 1 -------------GUG----CAUUUGA-----UUGACCUACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG -------------...----.......-----..(((...(((((....)----))..))----.(((((------(((.(((((((.((......)).))))))).))))))))))). ( -34.80) >DroSim_CAF1 2881 87 + 1 -------------GUGGCUUCAUUUGA-----UUAACCUACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG -------------..(((.........-----....((....(((....)----))..))----.(((((------(((.(((((((.((......)).))))))).))))))))))). ( -34.90) >DroEre_CAF1 2930 94 + 1 -------------GUG----CACUUGAAGAGAUCGACUCACCUGGAGCUC----CGCUGG----AGCUGGUGGCGGUGGCGGUGGACAGCACUUGAGCAGCUCGCCCUCGCCGGCGUCG -------------...----.............(((((((((...(((((----(...))----)))))))))((((((.((((..(.((......)).)..)))).))))))..)))) ( -35.70) >DroYak_CAF1 2933 84 + 1 ---------------G----AACUAGAG--GAUUGACUCACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGUAGUUCGCCCUCGCCGGCGUCG ---------------.----..((((.(--((..((..(....)..))))----).))))----.(((((------(((.(((((((.((......)).))))))).)))))))).... ( -37.10) >DroPer_CAF1 3203 113 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCGGGGCGUUGGCGCUCGCAGG------AGGCGGGGGACAGCACUUGAGCAAUUCCCCCUCGCCGGCGUCG ....................................................(((((((((((((....)------))..((((((..((......))...)))))).)))))))))). ( -33.10) >consensus _____________GUG____CAUUUGA_____UUGACUUACCUGGAUCUC____CGCUGG____AGCCGG______UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG ......................................................((((((.....((((.......))))(((((((.((......)).)))))))....))))))... (-22.43 = -22.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:28 2006