Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,348,597 – 12,348,688 |
Length | 91 |
Max. P | 0.541900 |
Location | 12,348,597 – 12,348,688 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -39.95 |
Consensus MFE | -22.63 |
Energy contribution | -22.49 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.30 |
Mean z-score | -1.95 |
Structure conservation index | 0.57 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12348597 91 + 22224390 CACGAUCUGGUCGAAAGUC------------------CAGAUCAGGACCAGGGCAUGCUCGUUACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA ...(((((((.(....).)------------------)))))).......((((((((.((...(((((.....))))).)).))).........((....))))))). ( -40.40) >DroSec_CAF1 25339 91 + 1 CACGAUCUGAUCGAAAGUC------------------CGGAUCAGGACCAGGGCAUGCUGGUCACUGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA ...((((((..(....)..------------------)))))).......((((..(((((.......))))).(((((..(((.((.....)))))..))))))))). ( -35.40) >DroSim_CAF1 24686 91 + 1 CACGAUCUGGUCGAGAGUC------------------CAGAUCAGGACCAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA ...(((((((.(....).)------------------)))))).......(((((((((((((.(((......))).))))).))).........((....))))))). ( -40.10) >DroEre_CAF1 25526 91 + 1 CACGAUUUGGUGGAAAGCC------------------CAGAUCAGGAACAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCGCGCUCCUGCUGCCCA ...(((((((........)------------------)))))).......(((((.((.((...(((((.....)))))..((((........)))).)).))))))). ( -36.20) >DroYak_CAF1 27113 109 + 1 CACGAUCUGGUUGAAAGCCAGGAACAGCAGCAGGAUCCGGAUCAGGAUCAGGGCAUGCUGGUCACCGCCCAACCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA .....((((((.....))))))....((((((((((((......))))).((((..(.(((((..((((.....))))((...)).))))).)..)))))))))))... ( -46.80) >DroAna_CAF1 39094 91 + 1 CAGGAGCAGGAUCAGGAUC------------------AGGAUCAUGAUCAGGGUGUCCUGGUGACAGCACAGCCGGCUGCUGUCCAGACCACCGCCCUGCUGCUGCCCA (((.((((((.....((((------------------(......)))))..((((..((((..((((((........))))))))))..))))..)))))).))).... ( -40.80) >consensus CACGAUCUGGUCGAAAGUC__________________CAGAUCAGGACCAGGGCAUGCUGGUCACCGCCCAGCCGGCGGCCGUGCAGACCACCUCGCUCCUGCUGCCCA ...((((((............................)))))).......(((((.........(((((.....)))))....((((............))))))))). (-22.63 = -22.49 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:26 2006