Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,341,581 – 12,341,678 |
Length | 97 |
Max. P | 0.946184 |
Location | 12,341,581 – 12,341,678 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.03 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -19.35 |
Energy contribution | -18.85 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.25 |
Mean z-score | -1.86 |
Structure conservation index | 0.78 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12341581 97 - 22224390 CUAAGGUGUUU----AGUAUCAUUAUUUUUUUUCGGUGUAUUAUCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGGAGUGCACAUACAU .....((((..----((((....))))...((((((((....(((((((((.....))))((..(....)..))...))))))))))))).))))...... ( -19.70) >DroSec_CAF1 18331 92 - 1 UUAAGGCUUCU----AGUAGCAUUAUUG-UUCUCUGUGUAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGUGGUGCAC----AU .....(((...----...))).......-.....((((((((((...((((((((..(((.........))).....))))).))))))))))))----). ( -24.90) >DroSim_CAF1 17766 81 - 1 UUAAGGCU---------------UAUUG-UUCUCUGUGCAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGUGGUGCAC----AU ........---------------.....-.....((((((((((...((((((((..(((.........))).....))))).))))))))))))----). ( -24.30) >DroEre_CAF1 18551 96 - 1 UUGAAUAUUCUUUUCGCUAUCCUAAAUG-UUCUCCGUGCAUUACCUGGGCAUCUGUUGUCUGUUCUUUUGGCCAGAACAGAUCGCUGGGGUGCGC----AU ..(((((((...............))))-)))...((((...((((.(((((((((..((((..(....)..)))))))))).))).))))))))----.. ( -30.16) >consensus UUAAGGCUUCU____AGUAUCAUUAUUG_UUCUCUGUGCAUUACCUGGGCAUCUGUUGCCUGUUCUUUUGGCCAAAUCAGAUCGCUGGGGUGCAC____AU ...................................(((((((((...((((((((..(((.........))).....))))).))))))))))))...... (-19.35 = -18.85 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:25 2006