Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,339,097 – 12,339,195 |
Length | 98 |
Max. P | 0.606904 |
Location | 12,339,097 – 12,339,195 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.20 |
Mean single sequence MFE | -35.27 |
Consensus MFE | -27.72 |
Energy contribution | -28.70 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.06 |
Mean z-score | -2.04 |
Structure conservation index | 0.79 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12339097 98 + 22224390 ACUACCGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACC------AGAGUACA-GGUGGUGCUUAUUCUGCUGGUGGUGUUGCUCGGGUGCUCCAAUUGGUUG--G- ....((((((((((..((((((..((..((....((((((------........-)))))))).))..))))).)..)))))).)))).....((((....)))--)- ( -32.30) >DroSec_CAF1 15857 108 + 1 ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUGUUCGGCUGCUCCAAUUGGUGGUGGU (((((...((((....((((((..((..((....(((((((.((((...)))).))))))))).))..)))))).(((.((.(.....).)).)))))))...))))) ( -36.60) >DroSim_CAF1 15364 105 + 1 ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUCUUCGGCUGCUCCAAUUGGUGGU--- (((((.(((.......((((((..((..((....(((((((.((((...)))).))))))))).))..)))))).(((.((.(....)..)).)))))).)))))--- ( -36.90) >consensus ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUGUUCGGCUGCUCCAAUUGGUGGU_G_ .((((.(((.......((((((..((..((....(((((((.(((.....))).))))))))).))..)))))).(((.((.........)).)))))).)))).... (-27.72 = -28.70 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006