Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,336,566 – 12,336,658 |
Length | 92 |
Max. P | 0.558573 |
Location | 12,336,566 – 12,336,658 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -14.86 |
Consensus MFE | -7.02 |
Energy contribution | -7.46 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.08 |
Structure conservation index | 0.47 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12336566 92 + 22224390 GCAGGAGAAAUAAUGAGAUUUUAUAUUUUCUCUAUUCUAGAAAGUUUU--UUUCCUCUUCAGCACAGCCUGACCUUUUUUUU-UUUUUGUUCUUC ((((((((((....(((.......(((((((.......)))))))...--....))).((((......)))).......)))-)))))))..... ( -13.34) >DroSec_CAF1 13507 92 + 1 GCAGGAGAAAUAAUGAGAUUUUAUAUUUUCUUU-UUCUAGAAAGUUUU--CUUCCUCUUCAGCACAGCCUGACCUUUUUUUCAUUUUUGUUCUUC ...((((((..(((((((......(((((((..-....)))))))...--........((((......))))......)))))))....)))))) ( -15.50) >DroEre_CAF1 13528 88 + 1 GCAGGAGAAAUAAUGAGAUUUUAGAUUUUCUUU-UUCUAGAAAGUUUU--UUUCCUCUUCAGCGCAGCCUGACCUUUUUC----UUCUGUUCCUC ((((((((((....(((.....(((((((((..-....))))))))).--....))).((((......))))....))))----))))))..... ( -22.00) >DroYak_CAF1 14844 87 + 1 GCAGGAGAAAUAAUGAGAUUUUAUAUUUUCUUU-UUCUAGAAAGUUUUUUUUUCCUCUUCAGCACAGCCUGACCUUUUU-------UCGUUCUUC ...((((((.....((((......(((((((..-....))))))).....))))....((((......)))).......-------...)))))) ( -12.10) >DroPer_CAF1 27269 75 + 1 GCAAGAGAAAUAAUGAGAUUUUACAUUUUCUUU-UUCUAGAAAGUUUCC-CUUCUUCU-----------UCUUCUUUUC-------UCGUUUAUU ....((((((.((.((((......(((((((..-....)))))))....-.....)))-----------).))..))))-------))....... ( -11.36) >consensus GCAGGAGAAAUAAUGAGAUUUUAUAUUUUCUUU_UUCUAGAAAGUUUU__UUUCCUCUUCAGCACAGCCUGACCUUUUU_____UUUUGUUCUUC .((((.........(((.......(((((((.......))))))).........)))..........))))........................ ( -7.02 = -7.46 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:23 2006